XLOC_027101 (ERC1)


Basic Information

Item Value
gene id XLOC_027101
gene name ERC1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8213063 ~ 8515824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053417
GAACTTAGAAGAATATAACCAGCACTTCACCCAGCCTTAATGGTGTCACTTCGCATAAGCTCGTGCACATACCGCGGTCATGGAGGCCAGTGTCGGGCGCGCGCATCCCGGTTCGTTACGTCACTTGAAGCGCCCTGGCTCTTAGATCTGGCAAAGAGAGGAAGAAAACGACAGAAGTCTCTAAAACAGGGCTTTCCCCTCCGTTACCAGCTCTCAAAGTGATAACGGTCCATCTACAACACTACACACAGGCACAGCCATCTCACCAAACCGGACTAACCTCTTGTAGAAGAAGAAATATAACATGACCAGAATAAATGGATAAAACCAGCAACTCTTCAAGAAGATGAGACATTGCACTATTTAAATATAGATCACAGACCCTTTACTAGGTTTACAGAGATCACCATCTCCACCAAAAACATCTGCATTCTCTTTACCCCTGCCGTTCACTGACCAGAGCCACCATGTATGGCAGTGCCCGATCTGTGGGCAAAGTGGAAGGCAACCACACTAGTGGGAGCACCCAAAGTCCTGGGCGTTCACCCCGTCTCCCTCGGTCCCCCCGTCTCGGCCATCGTCGCACTAATAGCACAGGGGGTAGCGGAGCCGGTGCCGGTCCAGGTGGTAAAACCCTTTCCATGGAAAACATTCAATCCCTTAACGCCGCCTATGCCACATCCGGGCCCATGTACATGAGTGACAATGAGGTGGTCACATCTGGTCCAGACCTGCCCAAAAGCACCATGACCCTGGGTCGCACCGGTGGACGAGTCCCCTACGGCGTCCGCACGACTGTAATGGGATCCAGTCCAAACATCGCCACTGGATCCCCTGGCACCACTGATGCAATTGCTTTCGGAGATCACCATATGCCTTCCACGTTGGCGTCCACTGTGCCTCATTCGCTACGGCAGGCGCGGGACAACACCATCATGGACCTGCAGACGCAGCTCAAGGAGGTGCTTCGGGAGAACGAGCTCCTGCGGAAGGAGGTGGACGTGAAGGAGAGCAAACTCAGTTCCTCCATGAACTCCATTAAGACCTTCTGGAGCCCCGAGTTGAAGAAGGAGCGCGCCCTGCGTAAGGATGAAGCCTCTAAGATCAGCGTGTGGAAGGAGCAGTACAGAGTCGTCCAGGATGAGAATCAGCATCTCCAGATGACCATCCAGGCCCTCCAGGACGAGCTGCGGATCCAGCGGGACCTGAACCAGCTCTTCCAGCAAGACCCCAGCTCTCGTCCTGGCGAGCCACTGACTGCCGAACTGACCGAGGAGAACTTCCAGCGTCTGCATGGCGAGCACGAGCGTCAGGCCAAAGAGCTGTTTCTACTGAGGAAGACTCTGGAGGAGATGGAGCTGCGCATCGACACCCAGAAACAGACGCTCAACGCTCGGGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGTAAAGGACTCTCGGCCAAGGCCAGCGAGGAGGACCACGAGCGCACCCGGAGACTGGCCGATGCTGAAATGCACATCCACCATCTGGAGAGTTTGCTGGATCAGAGGGACAAAGAGATGGGGCTGCTGAGAGAGGATCTCCACCGGCGTTATGAGGGAGCTCCAGAATCGGCCAAAACCAAGGCTCTGCAGACTGTCATCGAGATGAAGGACTCAAAGATCGGCTCTATGGAGCGCAGTCTGAGGGACCTGGAGGACGAGATTCAGATGCTGAAGTCTAACGGAGCTCTAAGCACAGAGGAGCGAGAGGAGGAGATGAAGCAGATGGAGGTTTACCGCAGTCACTCCAAGTTCATGAAGAATAAGATTGACCAGGTGAAGCAGGATCTGTCCAGGAAGGACTCTGAACTTTTGGGCCTGCAGACTAAACTGGAGACCCTGACCAATCAGTTTTCTGACAGCAAACAGCACGTCGATGTCCTCAAAGAGTCTCTCACTGCCAAAGAACAGCGTGCCGCCATCCTGCAGACTGAGGTCGATGCTCTGCGTTTGCGTCTGGAGGAGAAGGAGGCCACGCTGAATAAAAAGAGCAAGCAGATTCAAGAGGTGTCGGAGGAGAAAGGCACGCTCAACGGAGAAATTCACGACCTCAAAGACATGCTTGACGTCAAGGAACGCAAGGTCAATGTGCTGCAGAAAAAGATTGAGAACCTGCAGGAGCAGCTGAAGGATAAGGAGAAGCAGATGAGCAGTCTCAAGGAGCGCGTCAAATCCCTGCAGGCCGACACGTCAAACACGGACACGGCCCTCAGCACGCTGGAGGAGGCCCTGGCTGAGAAGGAGCGCATCATTGAGCGTCTGAAGgaacagagagacagagatgaGAGGGAGAAGAGCGAAGAACTGGAGAGCAATAAGAAAGAGCTAAAAGAGCTGAAAGAGAAGGTCAACGTACTGCAGGGAGACCTGTCCGATCGCGAGGCCTCTCTACTGGACCTGAAGGAGCACGCCTCGTCCCTGGCCTCCTCTGGACTGAAGAAAGACTCCAAGCTGAAGAGTCTGGAAATCGCTCTTGAGCAGAAGAAAGAGGAGTGCATCAAACTGGAGAGTCAGCTCAAGAAGGCTCATTCTGTCGCAGTCGAGGCTCAGACTAGTGCAGGACTGTCGGAGCGCATTGCCACACTTGAGCAGGAGGTGGCACGTTACAAAGAAGATGCTGGGAAGGCTCAGGCCGAAGTCGACCGACTCCTGGAAATCCTCAGAGAGATGGAAAATGAGAAGAATGACAAGGACCGCAAGATCAACGAGCTGGAGAGGCAGATGAAAGACCAAAGCAAGAAAGTTGCCAACCTGAAGCACAAAGAGCAGGTGGAGAAGAACAAGAACGCCCAGCTGATGGAAGAGGCCCGTAAGCGAGAGGATAACATCAATGAGAGTTCTCAACAGGTCAAGgATTCTTTGCGGCTGAAAGACGATCGCATCGAGGAGCTGGAGGAGGCTTTGCGTGAGAGCGTTCAGATCACTGCTGAGAGAGAAATGGTGCTGGCACAAGAGGAATCCGCTCGGGCAAATGCTGAGAAACAGATGGAGGAGCTGTTGGCCGCCATGGAAAAGGTGAAGCAGGAGTTGGAGTCCATGAAGGCCAAGCTGTCGTCCACTCAGCAGTCTCTGGCGGAGAAGGAGTCGCACCTGACCACGCTGAGGGCCGAGCGCAGAAAGCACCTGGAGGAGGTGCTGGAGATGAAGCAGGAGGCACTGTTGGCAGCCATCAGCGAGAAGGACGCCAACATCGCTCTACTGGAGCTTTCGTCCTCAAAGAAGAAGAAAACTCAAGATGAGGTGGCTCTGctgaagagagagaaagacaggcTGGTTCATCAACTCAAACAGCAGACGCAGAACCGCATGAAGTTAATGGCTGATAACTATGAGGATGACCACCACAAGGCCTCCAATTCTGACCAAACCAATCACAAGCCCTCTCCAGACCAGATTATCCCCCCGCTCATAGACCTCAATCAGAACCGCAGTAAGCTGAAACTGTACATCGGCCACCTCACGGCCCTCTGCCACGAGAGAGACCCGCTCATCCTGCAGGATCTAGCCCCGCCCTCAGCATACCACCGCAGCCAACGGGACGCCTGGGAGGAGGAGCTGCAGAAGATGAGCCCCGAACAGCTGGAATCTGAGTTGGAGCAGTGCGAGCGAGAGAGTGCCGAACTGCAGGAATACGCAAACTCTGTCCTGCAGCAGATCGCCGATCACTGCCCGGACATCCTGGAGCAGGTGGTCAATGCTCTGGAGGAGTCATGCTGA
>TCONS_00053418
CGGGCGCGCGCATCCCGGTTCGTTACGTCACTTGAAGCGCCCTGGCTCTTAGATCTGGCAAAGAGAGGAAGAAAACGACAGAAGTCTCTAAAACAGGGCTTTCCCCTCCGTTACCAGCTCTCAAAGTGATAACGGTCCATCTACAACACTACACACAGGCACAGCCATCTCACCAAACCGGACTAACCTCTTGTAGAAGAAGAAATATAACATGACCAGAATAAATGGATAAAACCAGCAACTCTTCAAGAAGATGAGACATTGCACTATTTAAATATAGATCACAGACCCTTTACTAGGTTTACAGAGATCACCATCTCCACCAAAAACATCTGCATTCTCTTTACCCCTGCCGTTCACTGACCAGAGCCACCATGTATGGCAGTGCCCGATCTGTGGGCAAAGTGGAAGGCAACCACACTAGTGGGAGCACCCAAAGTCCTGGGCGTTCACCCCGTCTCCCTCGGTCCCCCCGTCTCGGCCATCGTCGCACTAATAGCACAGGGGGTAGCGGAGCCGGTGCCGGTCCAGGTGGTAAAACCCTTTCCATGGAAAACATTCAATCCCTTAACGCCGCCTATGCCACATCCGGGCCCATGTACATGAGTGACAATGAGGTGGTCACATCTGGTCCAGACCTGCCCAAAAGCACCATGACCCTGGGTCGCACCGGTGGACGAGTCCCCTACGGCGTCCGCACGACTGTAATGGGATCCAGTCCAAACATCGCCACTGGATCCCCTGGCACCACTGATGCAATTGCTTTCGGAGATCACCATATGCCTTCCACGTTGGCGTCCACTGTGCCTCATTCGCTACGGCAGGCGCGGGACAACACCATCATGGACCTGCAGACGCAGCTCAAGGAGGTGCTTCGGGAGAACGAGCTCCTGCGGAAGGAGGTGGACGTGAAGGAGAGCAAACTCAGTTCCTCCATGAACTCCATTAAGACCTTCTGGAGCCCCGAGTTGAAGAAGGAGCGCGCCCTGCGTAAGGATGAAGCCTCTAAGATCAGCGTGTGGAAGGAGCAGTACAGAGTCGTCCAGGATGAGAATCAGCATCTCCAGATGACCATCCAGGCCCTCCAGGACGAGCTGCGGATCCAGCGGGACCTGAACCAGCTCTTCCAGCAAGACCCCAGCTCTCGTCCTGGCGAGCCACTGACTGCCGAACTGACCGAGGAGAACTTCCAGCGTCTGCATGGCGAGCACGAGCGTCAGGCCAAAGAGCTGTTTCTACTGAGGAAGACTCTGGAGGAGATGGAGCTGCGCATCGACACCCAGAAACAGACGCTCAACGCTCGGGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGTAAAGGACTCTCGGCCAAGGCCAGCGAGGAGGACCACGAGCGCACCCGGAGACTGGCCGATGCTGAAATGCACATCCACCATCTGGAGAGTTTGCTGGATCAGAGGGACAAAGAGATGGGGCTGCTGAGAGAGGATCTCCACCGGCGTTATGAGGGAGCTCCAGAATCGGCCAAAACCAAGGCTCTGCAGACTGTCATCGAGATGAAGGCAAGTGTGTGTGCGagtttgctttgtgtgtgtgGTGAGGAAATCACAAACTTTAGTattctttataataataaaatgataatggGGTTGTTGTTTTAATACTGTGCATGATGACAATATTGAGTGTGTCCAGggcttgacatgaactttttttgatcaccagccactgtggctagtaatTTTTCAACATTTACTAGCCACGCACAATTTTTAAATGGATATTATTTATGCATAAATTcaactttggcatgctaaaatgacttaatttaggttttgtattacactgtaaaaaatgcagggttccacacacttcattcatgttttcccaacacaaattgatttggttaacttaacactttaaacaaatgtatgtggat
>TCONS_00053419
acAGATGGAGGAGCTGTTGGCCGCCATGGAAAAGGTGAAGCAGGAGTTGGAGTCCATGAAGGCCAAGCTGTCGTCCACTCAGCAGTCTCTGGCGGAGAAGGAGTCGCACCTGACCACGCTGAGGGCCGAGCGCAGAAAGCACCTGGAGGAGGTGCTGGAGATGAAGCAGGAGGCACTGTTGGCAGCCATCAGCGAGAAGGACGCCAACATCGCTCTACTGGAGCTTTCGTCCTCAAAGAAGAAGAAAACTCAAGATGAGGTGGCTCTGctgaagagagagaaagacaggcTGGTTCATCAACTCAAACAGCAGACGCAGAACCGCATGAAGTTAATGGCTGATAACTATGAGGATGACCACCACAAGGCCTCCAATTCTGACCAAACCAATCACAAGCCCTCTCCAGACCAGGACGATGAGGAGGGCATTTGGGCATAG
>TCONS_00053420
acAGATGGAGGAGCTGTTGGCCGCCATGGAAAAGGTGAAGCAGGAGTTGGAGTCCATGAAGGCCAAGCTGTCGTCCACTCAGCAGTCTCTGGCGGAGAAGGAGTCGCACCTGACCACGCTGAGGGCCGAGCGCAGAAAGCACCTGGAGGAGGTGCTGGAGATGAAGCAGGAGGCACTGTTGGCAGCCATCAGCGAGAAGGACGCCAACATCGCTCTACTGGAGCTTTCGTCCTCAAAGAAGAAGAAAACTCAAGATGAGGTGGCTCTGctgaagagagagaaagacaggcTGGTTCATCAACTCAAACAGCAGACGCAGAACCGCATGAAGTTAATGGCTGATAACTATGAGGATGACCACCACAAGGCCTCCAATTCTGACCAAACCAATCACAAGCCCTCTCCAGACCAGATTATCCCCCCGCTCATAGACCTCAATCAGAACCGCAGTAAGCTGAAACTGTACATCGGCCACCTCACGGCCCTCTGCCACGAGAGAGACCCGCTCATCCTGCAGGATCTAGCCCCGCCCTCAGCATACCACCGCAGCCAACGGGACGCCTGGGAGGAGGAGCTGCAGAAGATGAGCCCCGAACAGCTGGAATCTGAGTTGGAGCAGTGCGAGCGAGAGAGTGCCGAACTGCAGGAATACGCAAACTCTGTCCTGCAGCAGATCGCCGATCACTGCCCGGACATCCTGGAGCAGGTGGTCAATGCTCTGGAGGAGTCATGCTGA

Function

symbol description
erc1 Enables cadherin binding activity. Involved in I-kappaB phosphorylation. Located in centrosome and ciliary basal body. Part of IkappaB kinase complex.

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041210-51 Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in maintenance of presynaptic active zone structure; neuromuscular synaptic transmission; and regulation of synaptic plasticity. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytoskeleton of presynaptic active zone. Orthologous to human ERC1 (ELKS/RAB6-interacting/CAST family member 1).

Ensembl:

ensembl_id ENSDARG00000031930 ENSDARG00000076014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053417 False 3749 mRNA 0.54 18 8213063 8515824
TCONS_00053418 False 1927 mRNA 0.51 4 8213156 8263622
TCONS_00053419 False 439 mRNA 0.54 4 8376362 8478624
TCONS_00053420 True 736 mRNA 0.56 5 8376362 8515824

Neighbor

gene id symbol gene type direction distance location
XLOC_027100 ninj2 coding upstream 4409 8168514 ~ 8208654 (+)
XLOC_027099 CU695020.2 coding upstream 78353 8134594 ~ 8134710 (+)
XLOC_027098 NA coding upstream 163805 8045442 ~ 8049258 (+)
XLOC_027097 optn coding upstream 185745 8016457 ~ 8027318 (+)
XLOC_027096 camk1da coding upstream 230047 7888047 ~ 7983016 (+)
XLOC_027103 wnt5b coding downstream 16756 8532580 ~ 8663117 (+)
XLOC_027104 adipor2 coding downstream 154838 8670662 ~ 8737886 (+)
XLOC_027105 NA coding downstream 200301 8716125 ~ 8726451 (+)
XLOC_027106 sult4a1 coding downstream 281373 8797197 ~ 8810740 (+)
XLOC_027107 NA coding downstream 358741 8874565 ~ 8885723 (+)
XLOC_027090 NA non-coding upstream 495404 7715601 ~ 7717659 (+)
XLOC_027088 NA non-coding upstream 546317 7652574 ~ 7666746 (+)
XLOC_027087 NA non-coding upstream 617366 7545660 ~ 7595697 (+)
XLOC_027111 NA non-coding downstream 591435 9107259 ~ 9148954 (+)
XLOC_027113 NA non-coding downstream 681526 9197350 ~ 9203068 (+)
XLOC_027115 NA non-coding downstream 825003 9340827 ~ 9346703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_00489175_00503984 NA coding CI01000066 null 489044 ~ 504016 (+)
bowfin (Amia calva) AMCG00006908 NA coding CM030134.1 CM030134.1 25516575 ~ 25518323 (-)