G800276 (LOC106571902)


Basic Information

Item Value
gene id G800276
gene name LOC106571902
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37356933 ~ 37360724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU910817
tacaatgtagaaaatagtcaaaaataaagtaaaaccgttgaatgagtagctgttctaaaacttttgactggtagtgtgtaTGTAGATGAAATGCATGCTGAGCTCCAGTAACAATCAGCTTAATGTGGGACGCAAGAGCAAGTCAACATCAGGAGATTCAAAATCTAAACCAATGAAAAGAGAAGAAATAAAGTTATTCAACTTTACAGGCTGACCTGTTCAGTCAGCTCACAGTGAAAAAGACACATGACGCATCAGGTCCATGCAGTGCATCGTGGGGGTACTTATCAGACTATAGACTGTGGACAATTCTTGAAGCACTACAACACATATCAAGATAATTGTATACATTTCGTTCTCTATTTTTACATTGTCCGACCATTTCTGAGTTACAAAAAAGAAAATTAGAAAGACATTCAATTGATTATTCATGTCATAGGTAAGATATGTTTATCTGTCTACATTTCCTTATTTGTTGTTATAATATCATGGATCTAACATGAACAGACGTGTTGAGTGAAGCCTAGGcctcaacccactgggcacaggtgtcaattcaacgtctattccacgttggttcaacgtaatttcattgagaTGTGGAAACAACCTTGATTCCAtaagtgtgtgcccagtgggaagtctGACTTACGGTTGTGGTTTTCTTAGTGAATGTTAAAATACATTTACACCCTGAATATTGGGACAAACAGTTGACTTTTACTTTAATGTACACGCGATAATATACTCTCATTTCGTAGAATGTAGAAAGATATTTTTCTTTACATATAACCCAGTTCCTTTGTTTCATTTGCATTTCTTTGCTGTGTATTAGATCTGGATTTCCTGAAAAATGAAAGCGCTCCTTCATATGTGCTTATCCAGCAAAATATTTCTGTTCTGCCCAGAGGGAAGCATATTCCTTTattaaaatatatacacacattccTCCTTCTTTTTACCGTcaaccagtgcttgacttgggacACCGGAGCAGAGTACCGGCACTTCATACTACTGCTTGAGGttctgttcctcttatagaatttTAGCTCATAAGTATTGAGGAGCTCCAgtacctaaatataaacagtactggcacccaaaatgagtaccggaacctatttcagtccaagtcaagcactgccgTCAACTGTCTAAATAAGTATATcatctgaagaaaaaaaataagaattCACCTGAATCTCTTCCAGGACAACATGATAACAGACTTGAACCTGTAAAGGGCCTTACaagtctgtattttttttttatgtgattGCACTTCAATCGACTATGGTAACACTGATTTGTTATACAATGTGCTGAGGATAGCCTCACATTAATAACATTACATGCAAAACCACTTCCGACATTCCACTGAATTCGAAAATCCCAGGACCGTGTTTCTCAGAGAACCATGAGAACAGCCACACATTAAGCCACTGAGAGAGAACGACAGGGTTCCAACCTAAATAAATAACGATGCAACAtggaaacacacaaaacaaacagaagggacactttttttttgtttttgtttgaatgTACAAAACCAGTACGAAGATattgcacatactgtacataatgaTAAAAACTAAGATGACAAACAAaaaactacacactacatacttaAGGTTATTCTAGTCACTCACCTACTCAGGATTTGTGATGAAAACAAAGACACAGTAAATGatgaaaaaaatcaaataaaggATTATCGTATTTTGATTTGAAGAGTCAAGAATGCAGCTGCTTCATATTTCAAAAGGCATGAGACATTTGTCAGCTTTACTGCGGGTCCATCAGTAAAGTGACGCGAGCCTCAACTTCTATCGCGTAAAGTGTCTTGAGAGGTCAGGAACGCTGTGAGCTTAAGCCAGCATACAACCAAAAGAAGGCCATGAGCTCAACACGAGATCTGTGACCCTTCCACCACTGCCACCTTACTACACGCCCGTACTCACAGTACTACACGCCCGTACTCACAGTACTAAACGTCCGTACTTCATATCGAAGTACAACACCGAGCCGAGCGGGACCCATCCACCCAGCATAGGAACAACATATGATCAGTAGACACCCAATATCTGTTCTCTCTTGAGGTTTTATACATGACAGCCCAGCATTAGGAGGGCCATGTGCCACAGCTGCATTCCAGTCTCTCAATGCTCTGTTTGAAAGGCAAAAGGTTCCAGAGTAGGTTATTGGACTGCCTGACAACGTGGCTCCACTCCCCCTTCCCATCTATCCTGTTCCCATAGAGTCAGTATAATACTGATACAGTTGATTTCTAATGATAATAATGGTTGTAAGTATAATCTTACAAGGTACTTTACGCACAATATACTGCACATGAAGTCTAGACTAAATCGTTTATGCATTAGTAATTGGCACATTTATCAAATGAGTGCTAGGAGACAACACGTAAAGCTGTCATCTACAGTAAATACAACACTAGAACTACTACGATTGAGACTGTTGTTAGCCTGTCCGTTGGTCTAGTTATTGTGAAATGATTACACCTAGCTTTTTTACACAACATGAATTCTAGGAGAGGCAAGAACAAATAGCATTCTTAAAAATGAAGAGAGTTTTGGAAACCTCAAGAAAGCAGAGTGTTAAAAGCTAGCTTTGTTTAAAAAGACTGTATACAATATAATATGCCATTGTGACAGAGAAAACAGTCAGACATGTTTTCTCAGGCCTATCCCAGGTGGTCTTGTCTCCTGATTACGTGAAGGGAAGACGGGCTATTGAAAGAACGGAGAAGTGGACAGCGGCCTAAAGAGAATGCACGGTTCTCTTCAGCCGTCACGGCCGGGTTTGGTGTGAGttcatggggaggaggagggaaagcgTTTCCCCGTACAAAACACCTCCCTGAagccctgacagagagacagaggccctTACTAAGGTTCGAGCTGAGGCCCTTTGTGGAAGAATTGAATCTGGTTTCCATCCAGCATATTGGTGAGCAGCTGAAGGGGGGAGCGGATACATGGGACTGCCAGAGGTCCATCTCCATCACAGCAGTGGAACACAGTAGATAGGCCATCGACTGACAGTATACCCTCTGTCCCTTTGGGGGAAGAGACTGTCCCTCCCTTAagttcactcactcactctttcctTTTGCTCATTcaatcttttctctctctctctagctctctttcgttctctcttttgctctcgcACTATTTCAGTGAGGGAGGTCACACCACGGTGCTGATGCCACTGTGTTTGGGTTTGGGCCCGCTGGGTGCCGGGCCCTGCAGCTGACTGTGGTGGTGAGGGGCATGCTGGGAGTGTGAGGCGTGAAGGGAATGCTGGCTATGGGTGCCGTGGCTGTGCTGTGGTACATGCGGGTGGGggtgggtgtgttggtgtgtgtgggagGAGGATGCATATGCTGCCGGGTGCTGGTGGTACTGTGTATGGGGAGGGgggtggtaatggtggtggtggtggtagTACTGGGAGTGGTGGAGCTGGGCCTGGGCTACCTGCTGGGCTGTGTGGTGGAGGTTGGACGGATGGGGCGTGTGGGAGATGAGGGTGGGGTGACcaggcagaggaagaggaggatggctcTGGGATGAAGGCTTCCCCCGTTTGTTGCCAAAGAGCGACccgaggagggaggaggagttggGGATGGTAGGGTGGCCCCGGGGCGGGCCCTCGCTGCGTGGGGTTGTGGCTCTCCGGCGTATGTGAGGACTGTTAATGATGGACCC

Function

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU910817 True 3743 lncRNA 0.44 3 37356933 37360724

Neighbor

gene id symbol gene type direction distance location
LOC110531988 LOC106571900 coding downstream 275164 37034299 ~ 37081769 (-)
fbxw12 fbxw12 coding downstream 393013 36953521 ~ 36963920 (-)
LOC110531982 LOC106571893 coding downstream 449233 36827882 ~ 36907700 (-)
LOC110531981 LOC106571892 coding downstream 536340 36721987 ~ 36820593 (-)
LOC110531980 LOC106571891 coding downstream 667762 36681295 ~ 36689171 (-)
LOC110531992 LOC106571904 coding upstream 4953 37365677 ~ 37372883 (-)
cnbpa cnbp coding upstream 12496 37373220 ~ 37377288 (-)
LOC100505416 pparg coding upstream 69169 37429893 ~ 37436194 (-)
LOC110531996 LOC100136520 coding upstream 80835 37441559 ~ 37476549 (-)
LOC110531998 LOC106571908 coding upstream 206488 37567212 ~ 37581804 (-)
G800155 NA non-coding downstream 135938 37135664 ~ 37220995 (-)
G800088 NA non-coding downstream 332162 37024007 ~ 37024771 (-)
G800024 NA non-coding downstream 465384 36891045 ~ 36891549 (-)
G799453 NA non-coding downstream 530664 36826050 ~ 36826269 (-)
G800275 NA non-coding upstream 133 37360857 ~ 37361967 (-)
G800334 NA non-coding upstream 24666 37385390 ~ 37386330 (-)
G800358 NA non-coding upstream 54211 37414935 ~ 37417799 (-)
G800389 NA non-coding upstream 117003 37477727 ~ 37526430 (-)
G800411 NA non-coding upstream 152425 37513149 ~ 37516432 (-)
G800318 NA other downstream 11786 37344395 ~ 37345147 (-)
G798993 NA other downstream 1206296 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 1377818 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 1835601 35492026 ~ 35521884 (-)
LOC110532015 LOC106566767 other upstream 1480485 38839265 ~ 38841685 (-)
G802100 NA other upstream 1605732 38966456 ~ 38996032 (-)
G802138 NA other upstream 1689806 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1713757 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 2020026 39380750 ~ 39383210 (-)

Expression


Co-expression Network