G799858 (LOC106571908)


Basic Information

Item Value
gene id G799858
gene name LOC106571908
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37567245 ~ 37570411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU910348
agccTTTTTTCTTTTTGTATAACATGACAATCGTGCTTTATCATATGACACCATTTAAACACATATcatgtttatattatgttgtgcaTTAGGCAGTGAGACAGttcaaaataaacaaaacaatgtgattttttttactAGACATAGTTTCTATTTTTAATATAATCGTCAATATCTTCATTGTCATCATCATTTCGTATATTTCTGTAAGATATGTGCTTTAGTTTCTGTGATCAAAATGTTATTGCAGAAAACAGCAACtctttagaattttttttttcaacatttAGACAATAACTTCCAATGTATTACAGACATTCACAGTTACATGTTTTACACGGTACAGTTTTACAACAAAGTTCCAGAGAAAACTGTGGTAGAGTAACTTTATACAAAATTCACAGGACATGAACTGTAGCCATTTCACATTTTCACTTGGTTGTTTTGCTTTTCAAAGTAAACATGTTTTGTTCGACCGGATGCTTTTCACTGCCGTATAGAAGCCATATAAGCCAACTAGCATTGTCTTAACAGGCCATGTCAAATGTCTGTGGAAATTAAAGCTTTGAGCTTTTTACTAGTAAAGCAAAGACAACgaaaagaaaaagagaaacagACCACTCTTCTACTGGCCTGCAACTATACATCTACATTTGTATTGCTGAATACAAATTGATCAAAGTATAATTGATCATTACacataaagtgaaataaaaaggAATATTTTTAAACATAGAGTTGGTCCAATATTGTTTGCTAGTGTACAAAGTGATATTCTGGAGATCTGCCCAGTCATGCAAACAGACTATGGCTTGGTATAAATTGGTTGATAACTGGCTTAAGGCCTTCTCTGTTCTCGTCTTAGATCTGCCAGGAGACATTTTGGAATTTTTCTTTGATGTTCCTGAGGAAAGCATGCAAAAAAAGGTAAACAGGATTGACTGTCAGCATCAATGGGATAGTCAATGTTTGTAAATCACTTTTCTATACCCTGTGCGTTTGCATTCatttttttgtatgtttttgATACCCTGTGTTTCTCAAACCAAACACTACATGGCATAGATCGTTTTTGCTTTCGTCTGCCTACGATTTTGGTCCTCGGTCACAATATTTATAGTAGAAAACATATTAAAAATAATTCTAAAAATGTTTGTCACATAAAAGTTCTTTTTTttactaaaaaaaaaaaggaagataaaatcacagtctctctcacacacaaaatcTTTTGCAACAGATATACTGGATAATTCCAGGGTTCATAGACTTTAAACTTCTTATTGGCATTGTGCTTCTTCATCAGAGTTCCCTCATTGCCATGTGGCCTGTAATCAGCCTCACAGAGTGCAAAGTTTTGTAAAGAGATGACTGTGTGAGGCTTAGTAAACAACCACGATAATTTGGCCCCTTGCACTCTCCCATGTTGACAATTTTGTTCACTTGTACTTCATCTCTACTATAGTCACACTGTATTTACTTGGTTCATGAAGATATTGAACAAATTGCTATTCTATTTTCAATAGTTGTTTTCTTTTCTCACAGTATTACACAGTTTGTTTACATATTTTTACTCAGATTACGGTAGTTTTTGTGAACACTAACAGTCTTTGATTTTAGAATTTTTAATGCATACCAATAAAAAGACATTAACGGGTTGGTTTTACAAATGCAGAAAAATTAAACATGATTTTAAAATCCGGTTTGATCAGATATTGCCCCTGGAGGTAGGTGAATCAATTAAAATCTTGGAAGTCCTTTGTAATGTTCGCCGACTACACAATCTCCATGAGGGTTTTGCCTTGTCTAGACATTTGCCTCAGCGTTGGTCAGGTTTGTTGAGCTCACTATGTTGGGTGGTGGGATGGCCGTCTCTTTTGCCGTTGGGCTAACCGGATTGGGTGGTGGGCTGGTAGGGCTGGTCGGGTTGGCTGGAGTGGCAGGGACAGTAGGGACAGTTGGAACGGTCGGACTAGTTGGGTTCACAGGGCTAGCCATAGCTGGAATGGCTGGAGGTGCTGGGTTGGCCGGGGCTGCAGCAACCGGGCTTGTAGCAGTTGGATTGGCAGGACTAACCGGGTTGGATGGACTAGTTGGGTTGGCCGCGTTAGAGGGACTAGCAATGTTGGTCTCGGCAACCACTGTCTCAGGTCCGTTCTCCTGTGGCCGTCGGACCACTGCAGGAGGCTGGAACATTATCCGTAGGCGCTCTTTCCAGGTGCCCTTGAGTCCGAGGTACATGTAGACCATGTATCCAGGGATGAGGACCATGGAGGACAGAGCCATGAGCCAGCCCACTCCCTGGCCCCAGGCAGGGAACACGTAGTTGTTCAAGGTGAGAGGAACCATTTGGACTGCACTGAACAAGAACACCCCGGCCACGATGAGAGGGGTGAAACAAACCCAGCACAGCTTCCACCAGATACAGGGCTTGTAGCCAATCATCTCCTGGATGTTGTCATAGAATTTGTTCACACCTGCGAGACAAATGACTGTGTTATCAAAATATTCAAATTCAATTTCTTCCAATTTTCCACTGGTCTGCCATGAATTGTAATGAGGGAGGAGAGCTGGTGTAGTGTAGGACATGTGAG

Function

NR:

description
sodium- and chloride-dependent GABA transporter 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU910348 True 2594 TUCP 0.40 3 37567245 37570411

Neighbor

gene id symbol gene type direction distance location
LOC110531997 LOC106571907 coding upstream 50327 37510543 ~ 37516918 (+)
raf1a LOC106571905 coding upstream 142969 37379949 ~ 37424276 (+)
gp9 LOC106571903 coding upstream 202397 37362028 ~ 37364848 (+)
iqsec1a LOC106571902 coding upstream 207229 37179890 ~ 37360016 (+)
nup210 LOC106571901 coding upstream 401240 37102639 ~ 37166005 (+)
tnnc1a LOC106571909 coding downstream 34790 37605201 ~ 37610174 (+)
LOC110517304 LOC106571911 coding downstream 95931 37666342 ~ 37717107 (+)
LOC110532004 LOC106571913 coding downstream 150655 37721066 ~ 37729844 (+)
LOC110532006 LOC106571916 coding downstream 293269 37863680 ~ 37905930 (+)
LOC110532007 LOC106571918 coding downstream 353461 37923872 ~ 37948962 (+)
G799837 NA non-coding upstream 36782 37530017 ~ 37530463 (+)
G799789 NA non-coding upstream 120823 37445144 ~ 37446422 (+)
G799785 NA non-coding upstream 128302 37438691 ~ 37438943 (+)
G799780 NA non-coding upstream 149181 37416551 ~ 37418064 (+)
G799779 NA non-coding upstream 149920 37415707 ~ 37417325 (+)
G799863 NA non-coding downstream 11766 37582177 ~ 37582635 (+)
G799895 LOC105029132 non-coding downstream 58443 37628854 ~ 37630852 (+)
G799983 NA non-coding downstream 212914 37783325 ~ 37783538 (+)
G799984 NA non-coding downstream 213597 37784008 ~ 37784214 (+)
G799985 NA non-coding downstream 214018 37784429 ~ 37784956 (+)
G799578 LOC106571900 other upstream 531327 37034418 ~ 37035918 (+)
G799053 NA other upstream 1250440 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2195097 35364988 ~ 35372148 (+)
G797056 NA other upstream 3010623 34555931 ~ 34556622 (+)
G796495 LOC106613263 other upstream 3445505 34121422 ~ 34121740 (+)
G800834 NA other downstream 499805 38070216 ~ 38071433 (+)
G801778 NA other downstream 1217650 38788061 ~ 38788354 (+)
G801851 NA other downstream 1362541 38932952 ~ 38933868 (+)
LOC110532019 LOC106571933 other downstream 1497961 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 other downstream 1662654 39111355 ~ 39237408 (+)

Expression


Co-expression Network