G799895 (LOC105029132)


Basic Information

Item Value
gene id G799895
gene name LOC105029132
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37628854 ~ 37630852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU910386
tactgtacatactgtaatcGGTCAATTTCACATCCTTCATGATTCAGAGAAAAGGTCACCCGTTACCAAGCGAATCTTATGTACATCTTTTACAAACCCATACCAAATAAACACAGCCCTCTGATGCGTTTCAGATGCCGTAACAAGATACAGATGTGCTGTATATAAAATCCCTGAAAATGTCTCTCCGTGAGGTAAGCAAAAAAAAATTGGCATCATTATCACGCGTTTCCTTTcattccgtctctctctctctcattcgctGAAACATTCAACTTCGATTACTGGCAAATACAGAACAGATCAAAACACACTGTGTTTCCTTTAACATGGTTCcgccacaggaagagtagctgcaggcTGAAGATTGTGTCTATACGTGACTGTTACATGACTTAATAAACAAGGTAAAAATGTCCATTATGGATCATAACTTCGATATACAAGTCATTCATGGCAAGCATGGCAAATGACAATCCAATACCATACCCAGTTCCTTGGTTAAAGAGAGTTAAGTGTTAACTTAGAGGGTATCGGAAAGGCCACAGGAACAACAGGCATAAGAGGTACAGTATACAGAAGTTAAACTTGATTACATGCAAACAATGCAATGTTATTATAATTACCACAATTTACAAGAgctttgcaaaaaaaataaaaaaaataatgtgttTCATCTTTAATATTTTGCAAGAGGGTGACCCTCTCCATTCAACAAAGGAAAAACTAACATAATGTACGGCGTTCTTACATTATGGAATAGAAAAAAACTAAATGTTTACTTTGAAGATGACAGCAAAGTAGAGAACATAACATTGGCGGACAAGTGCTTTCAATGATCACTCCCTTCTGATGTTAACTGCAAATGACGACATCTAGAACAGTCATCAATAGGAATGTTACAAAGTCGTTCAAGGCCAACCTAAAGTAGCCCAGGCCCCTCAGCAAGAGTACCATTCAAAATATCTCAGTTTGGTCCCAGAAAACAATGATTCACATTCTGCTTGGCCAACTACTCCCTTCAGAACAAGGCATTAGCCACAGTTGTTCTGAAAACAACTTGACACATCCACTTTCCAGCGGGTGAATATGAAataacagtcccccccccccaatcgaGTTACCTCATAATAATTACATTTCTTGCAATAACCATTGCAAACCACCATTCACTATTATACACACTAAGCCTGTTGGATTACTTGAGTAAAACATTAAaaGGCATCAGACAGAGCATGTACTGTTTTAAGCATAATGGCGGGCACCATGTTCTATGAAAATCCATACTGAAATCACTTGCTTGACAGGTGAGTCTTCTCAGTCTCCACAAGCTGGAGTGCCAGGTGCATTTTCTTTTTCATTGACAGGCTACAAAATACCCTGGCGACACTGATGAAACAACATGGCCACCAAACCAGTCTTCTCCGTTTCCTCACGTTGACTCCAGCGTGTCCAGCTGGAACACATTGTGATTGGTCGGTGTGGTGAAGTAGAGCTGCTCATTGGACGAGGAGCGGTTGTCACATGGGCTGTTTAGCCCCAGTGTCCTCTCAAAGTCCAGCAGCTGGCCCATGAAGTTGAAGTTGGGGGAGATGTTGGACTTCTTCCTCTTGACAAAGTCGTAGGCGTCATTGAGTGACAGGTTGAGCCTCTGCATCAGGTAGGCCACGGTCACGGTAACGGAGCGGCTGATGCCAGCCAGACAGTGTACCAGGACGCCACACTGCTTGGACCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU910386 True 1735 lncRNA 0.42 2 37628854 37630852

Neighbor

gene id symbol gene type direction distance location
tnnc1a LOC106571909 coding upstream 18680 37605201 ~ 37610174 (+)
LOC110531997 LOC106571907 coding upstream 111936 37510543 ~ 37516918 (+)
raf1a LOC106571905 coding upstream 204578 37379949 ~ 37424276 (+)
gp9 LOC106571903 coding upstream 264006 37362028 ~ 37364848 (+)
iqsec1a LOC106571902 coding upstream 268838 37179890 ~ 37360016 (+)
LOC110517304 LOC106571911 coding downstream 35490 37666342 ~ 37717107 (+)
LOC110532004 LOC106571913 coding downstream 90214 37721066 ~ 37729844 (+)
LOC110532006 LOC106571916 coding downstream 232828 37863680 ~ 37905930 (+)
LOC110532007 LOC106571918 coding downstream 293020 37923872 ~ 37948962 (+)
LOC110532009 LOC106571922 coding downstream 346572 37977424 ~ 37979829 (+)
G799863 NA non-coding upstream 46219 37582177 ~ 37582635 (+)
G799837 NA non-coding upstream 98391 37530017 ~ 37530463 (+)
G799789 NA non-coding upstream 182432 37445144 ~ 37446422 (+)
G799785 NA non-coding upstream 189911 37438691 ~ 37438943 (+)
G799780 NA non-coding upstream 210790 37416551 ~ 37418064 (+)
G799983 NA non-coding downstream 152473 37783325 ~ 37783538 (+)
G799984 NA non-coding downstream 153156 37784008 ~ 37784214 (+)
G799985 NA non-coding downstream 153577 37784429 ~ 37784956 (+)
G800563 NA non-coding downstream 165768 37796620 ~ 37796857 (+)
G800566 NA non-coding downstream 169311 37800163 ~ 37800448 (+)
G799858 LOC106571908 other upstream 58443 37567245 ~ 37570411 (+)
G799578 LOC106571900 other upstream 592936 37034418 ~ 37035918 (+)
G799053 NA other upstream 1312049 36313129 ~ 36316805 (+)
G797932 pphln other upstream 2256706 35364988 ~ 35372148 (+)
G797056 NA other upstream 3072232 34555931 ~ 34556622 (+)
G800834 NA other downstream 439364 38070216 ~ 38071433 (+)
G801778 NA other downstream 1157209 38788061 ~ 38788354 (+)
G801851 NA other downstream 1302100 38932952 ~ 38933868 (+)
LOC110532019 LOC106571933 other downstream 1437520 39064150 ~ 39072385 (+)
LOC110531165 LOC106571934 other downstream 1602213 39111355 ~ 39237408 (+)

Expression


Co-expression Network