G801139


Basic Information

Item Value
gene id G801139
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38070233 ~ 38071472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU911750
gtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911751
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtgtctgtgcgcgtacatgtgtgtgtgtgtgcatgcgtgtgcttaggctatgtagtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911752
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtgtctgtgcgcgtacatgtgtgtgtgtgtgcatgcgtgtgcttaggctatgtagtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911753
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911754
gtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911755
gtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtc
>TU911757
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtctgtctgtgtgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtctgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtgtgtgtgtctgtctgtctgtctgtctgtctgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU911750 False 437 lncRNA 0.50 3 38070233 38070833
TU911751 False 456 lncRNA 0.50 3 38070233 38071472
TU911752 False 388 lncRNA 0.50 3 38070233 38071472
TU911753 False 272 lncRNA 0.50 3 38070233 38071472
TU911754 False 397 lncRNA 0.50 3 38070233 38070833
TU911755 False 361 lncRNA 0.50 3 38070233 38070833
TU911757 True 312 lncRNA 0.50 4 38070233 38071472

Neighbor

gene id symbol gene type direction distance location
LOC110532008 LOC106571920 coding downstream 92884 37961139 ~ 37977349 (-)
LOC110531163 LOC102784363 coding downstream 108846 37953610 ~ 37961387 (-)
LOC110531162 LOC106571919 coding downstream 117023 37948740 ~ 37953210 (-)
LOC110532003 LOC106571912 coding downstream 299836 37729990 ~ 37770397 (-)
LOC110531161 NA coding downstream 428327 37638412 ~ 37641906 (-)
LOC110532016 NA coding upstream 473732 38545204 ~ 38548047 (-)
LOC110532015 LOC106566767 coding upstream 767793 38839265 ~ 38841685 (-)
LOC110532017 LOC106571931 coding upstream 925039 38996511 ~ 39019461 (-)
LOC110532021 LOC106571935 coding upstream 1187016 39258488 ~ 39261833 (-)
LOC110532022 LOC106571939 coding upstream 1195853 39267325 ~ 39270815 (-)
G801072 NA non-coding downstream 17572 38050320 ~ 38052661 (-)
G801091 NA non-coding downstream 80867 37988635 ~ 37989366 (-)
G801086 NA non-coding downstream 87116 37982296 ~ 37983117 (-)
G801084 NA non-coding downstream 89690 37980343 ~ 37980543 (-)
G800721 NA non-coding downstream 152319 37917535 ~ 37917914 (-)
G801505 NA non-coding upstream 469973 38541445 ~ 38541651 (-)
G801508 NA non-coding upstream 470750 38542222 ~ 38542485 (-)
G801509 NA non-coding upstream 471629 38543101 ~ 38543540 (-)
G801515 NA non-coding upstream 472994 38544466 ~ 38544744 (-)
G801654 NA non-coding upstream 578878 38650350 ~ 38650677 (-)
G800318 NA other downstream 725086 37344395 ~ 37345147 (-)
LOC110531982 LOC106571893 other downstream 1162585 36827882 ~ 36907700 (-)
G798993 NA other downstream 1919596 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 2091118 35948544 ~ 35979307 (-)
LOC118966032 LOC106571870 other downstream 2548901 35492026 ~ 35521884 (-)
G802100 NA other upstream 894984 38966456 ~ 38996032 (-)
G802138 NA other upstream 979058 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 1003009 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 1309278 39380750 ~ 39383210 (-)

Expression


Co-expression Network