XLOC_027107


Basic Information

Item Value
gene id XLOC_027107
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8874565 ~ 8885723 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057613
CTCTCCACATCAGCCGCCACTTTAATTAATTCACACAGACGCGTAGACAAGGTCAAGCAGTTAAACGCgctattttatatatatccaCCAGCACCTCTCCATCATTAGACTCAGTTCCTcctctcttctttttttaatcatcCGCTTCGTCCAAATGAAGGGTCGTTCATTATCGTCTCGTGCCGCGTCCCTTCATCAGTGAAGAGGAGTCATCAAACACAGCCGGTGCATAAACATCAAACTAGCAGCTTTCCACTGTCGCTCCCCCCCGCAGGGTACACAGGATGTGTTTGTGTTCACCAAGCATCATCATGACTTGTCACCGCGGCTacgagtcttcattgaggccatcttccagcataaaccacg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057613 True 369 lncRNA 0.48 3 8874565 8885723

Neighbor

gene id symbol gene type direction distance location
XLOC_027106 sult4a1 coding upstream 63825 8797197 ~ 8810740 (+)
XLOC_027104 adipor2 coding upstream 136679 8670662 ~ 8737886 (+)
XLOC_027105 NA coding upstream 148114 8716125 ~ 8726451 (+)
XLOC_027103 wnt5b coding upstream 211448 8532580 ~ 8663117 (+)
XLOC_027101 ERC1 coding upstream 358741 8213063 ~ 8515824 (+)
XLOC_027108 samm50l coding downstream 125725 9011448 ~ 9025993 (+)
XLOC_027109 aldh1l2 coding downstream 143096 9028819 ~ 9048975 (+)
XLOC_027110 slc41a2b coding downstream 169765 9055488 ~ 9094690 (+)
XLOC_027111 NA coding downstream 221536 9107259 ~ 9148954 (+)
XLOC_027112 nfyba coding downstream 292274 9177997 ~ 9183602 (+)
XLOC_027102 BX649324.3 non-coding upstream 370764 8503687 ~ 8503801 (+)
XLOC_027099 CU695020.2 non-coding upstream 739855 8134594 ~ 8134710 (+)
XLOC_027098 NA non-coding upstream 825307 8045442 ~ 8049258 (+)
XLOC_027090 NA non-coding upstream 1156906 7715601 ~ 7717659 (+)
XLOC_027113 NA non-coding downstream 311627 9197350 ~ 9203068 (+)
XLOC_027115 NA non-coding downstream 455104 9340827 ~ 9346703 (+)
XLOC_027116 NA non-coding downstream 461196 9346919 ~ 9352632 (+)
XLOC_027126 NA non-coding downstream 737568 9623291 ~ 9634704 (+)

Expression


Co-expression Network