XLOC_027109 (aldh1l2)


Basic Information

Item Value
gene id XLOC_027109
gene name aldh1l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9028819 ~ 9048975 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053430
AGTCTGGTTCCGCTGCCACACGCAGACCCCAAACAGTCAATCTGCGAACTGCAGGTGCGAGTTTAAACTACCGCATGTGTTCAGCCCACCACCCCGGACTCTAAACTACACCTTTCCTCCAGCATTCACACTATTTTCACCATGTTGTGGACAGCGAACACGATAATGAGGAAATTCTCCTCGAGCTCTGTTTACTACCAAAATAAGCTGAAGCTGGCCCTGATTGGCCAAAGCTTGTTTGGACAGGAAGTGTATACAAACCTCCGCAAGCAGGGCCATAAGGTGGTCGGCGTTTTCACAGTTCCTGATAAGGACGGCAAGGCGGACCCCCTGGCGGTGGTGGCAGAGAAGGACGGGACGCCGGTGTTTAAGTTTCCACGCTGGCGAGTGAAGGGTAAACCCATCCCGGAGGTGGTGGAGGCGTATAAAGCAGTGGGTGCAGAACTGAACGTCATGCCCTTCTGCTCCCAGTTCATCCCTATGAATGTGATCGACTTCCCCAAACACGGCTCCATCATTTACCACCCCTCCATCCTGCCCAAACACAGAGGAGCCTCCGCGATTAACTGGACACTAATCGAGGGCGATAAGAAGGCTGGATTCAGTGTATTCTGGGCTGATGATGGTTTGGATACTGGACCCATCCTGCTGCAGAAAGAGTGTCAAGTAGAGCCCAACGACACAGTGGACACTCTTTATAACCGCTTCCTGTTTCCAGAGGGCATCAAGGCCATGGTTGAAGCTGTACAGCTCATTGCAAACGGAAAAGCTCCCAAAATCCCTCAGTCTGAAGAAGGAGCCAGTTATGAGGGAATCCAAAAGAAATCCAATGCTAAGGTGAATATGGCTCAGCCGGCAGAGGCTATTCATAACTGGATCCGTGGACATGATAAAGTTCCTGGTGCCTGGGTTGTGATGGATGGAAAGCCTGTAACTGTGTACGGTTCCTCAGTGTTGAGCGGGTCTGTGCCTGCAGGTCAGCCCATAGACATAGAAGGAGCGTCTCAGCCTGGACTCATCACCAAATCTGGACTCCTTCTCTTCGGCTCTGATGGAAAAGCGCTCCAGGTGAAGAGCCTACAGTTTGAGGATGGAAAGATGATTCCTGCGTCCAAATACTTTTCATCTGAGGAATCCGCCAGTTTGGATCTTACAGATGATGAGAAAAAAATGGCAGAGGAGATCAGGGCGATCTGGAAAGGGATTTTGAGTAATGTTGCAGCTATTGAAGAAACCACCGATTTCTTTAAGTGTGGAGCCGCTTCAATGGATGTAGTCAGGTTGGTGGAGGAGGTGAAGCAGAAATGCGCTGGTGTTCAGCTGCAGAACGAGGACGTTTATATGGCCACCACCTTCCAGAGCTTCATCCAGATGCTGGTCCGACGCCTGCGTGGAGAAGACCAGGAGGAGGAGATGCTTATTGATTATGCCACAAAAGAGGTCAACAACATGACCGTGAAGATGCCCTACCAGTGCTTCATCAACGGCAAGTTCGAAGACGCAGATGATGGAAAAACATACAACACCGTCAACCCCACAGATGGCTCGGTGATCTGTAAAGTGTCTTACGCATCAGTGGCAGATGTGGACAAAGCTGTAAGTGCTGCAAAAGAGGCTTTCGACAATGGGCCTTGGGGTAAGATGAACCCCCGTGACCGCGGCCAGCTGCTGTACCGTTTGGCTGACCTGATGGAGGAACACCAGGAAGAGTTGGCCACCATTGAGACCATCGACTCTGGTGCTGTTTACACTCTGGCTTTGAAAACACACGTCGGCATGTCCATTCAGACATTCAGATACTTCGCCGGCTGGTGTGACAAGATCCAGGGCTCAACGATACCCATCAATCAGGCCAGACCCAACCGAAACCTCACTTTTACAAAGAAAGAGCCTTTGGGtgtgtgtgccATTGTAATTCCCTGGAACTACCCGCTTATGATGTTGGCATGGAAGAGCGCGGCCTGTCTGGCGGCGGGAAACACACTCGTCTTAAAACCTGCTCAGGTAACTCCATTAACTGCATTGAAGTTTGCCGAGTTGACAATCAAAGCTGGCATTCCTAAAGGAGTCATTAACATTGTACCAGGATCAGGTGGTCTGGTCGGGCAGAGGATGTCTGAGCATCCTGATATCCGTAAGCTTGGTTTTACAGGCTCAACACCCATTGGCAAACAGATCATGAAGAGCTGTGCGGTCAGTAACCTGAAGAAAGTTTCACTGGAGTTGGGCGGTAAATCTCCTCTCATCATCTTCAGCGACTGTGACATGGATAAAGCAGTGCGAATGGGCATGAGTTCTGTGTACTTCAACAAAGGAGAAAACTGTATCGCCGCAGGCCGGCTGTTTGTTGAGGAGTCCATTCATGACGAGTACATCAGGAGAGTGGTTGAGGAAATCAAAAAGATGAAGATCGGAGATCCTTTAGATCGCTCCACAGATCATGGACCTCAGAACCACAAGGCTCACATGGACAAGCTGGTGGAGTATTGTGAGATCGGCGTGAAGGAGGGCGCGACACTCGTCTATGGTGGACGACAGGTGGACAGACCAGGATTTTTCATGGAGCCCACAGTCTTCACAGATGTAGAGGACCACATGTTCATTGCCAAAGAGGAGTCATTTGGCCCCGTCATGGTGGTGTCCAAATTCAAAGATGGTGATGTAGATGGAGTTTTGAGCAGAGCCAATGACACAGAGTTCGGCCTGGCTTCTGGCGTCTTCACCCGTGACATTAACAAAGCCATGTATGTGAGCGAGAGGCTAGAGGCGGGAACTGTGTTCATCAACACCTACAACAAAACTGATGTGGCGGCTCCTTTTGGAGGCTTCAAACAGTCCGGGTTTGGGAAAGACCTTGGTGAGGACGCCCTGCACGAGTACCTGCGGACTAAAGCTGTGACGGTGGAGTATTGAAGGAACACTGCTGGAACGAACTGCAAACAGCCTTTTACCGCAGCCCCATTTGACTTGAAACAGGTTTGATAGGAAACCCAGAGCATTTCCTGCCAAAACTACACTGATGTGCCTACATTTTGTATAATATCGCTTTTTTT
>TCONS_00053431
CTTTTGATCATCTTTCCCACAGGTTTACTACCAAAATAAGCTGAAGCTGGCCCTGATTGGCCAAAGCTTGTTTGGACAGGAAGTGTATACAAACCTCCGCAAGCAGGGCCATAAGGTGGTCGGCGTTTTCACAGTTCCTGATAAGGACGGCAAGGCGGACCCCCTGGCGGTGGTGGCAGAGAAGGACGGGACGCCGGTGTTTAAGTTTCCACGCTGGCGAGTGAAGGGTAAACCCATCCCGGAGGTGGTGGAGGCGTATAAAGCAGTGGGTGCAGAACTGAACGTCATGCCCTTCTGCTCCCAGTTCATCCCTATGAATGTGATCGACTTCCCCAAACACGGCTCCATCATTTACCACCCCTCCATCCTGCCCAAACACAGAGGAGCCTCCGCGATTAACTGGACACTAATCGAGGGCGATAAGAAGGCTGGATTCAGTGTATTCTGGGCTGATGATGGTTTGGATACTGGACCCATCCTGCTGCAGAAAGAGTGTCAAGTAGAGCCCAACGACACAGTGGACACTCTTTATAACCGCTTCCTGTTTCCAGAGGGCATCAAGGCCATGGTTGAAGCTGTACAGCTCATTGCAAACGGAAAAGCTCCCAAAATCCCTCAGTCTGAAGAAGGAGCCAGTTATGAGGGAATCCAAAAGAAATCCAATGCTAAGGTGAATATGGCTCAGCCGGCAGAGGCTATTCATAACTGGATCCGTGGACATGATAAAGTTCCTGGTGCCTGGGTTGTGATGGATGGAAAGCCTGTAACTGTGTACGGTTCCTCAGTGTTGAGCGGGTCTGTGCCTGCAGGTCAGCCCATAGACATAGAAGGAGCGTCTCAGCCTGGACTCATC

Function

symbol description
aldh1l2 Predicted to enable aldehyde dehydrogenase (NAD+) activity and formyltetrahydrofolate dehydrogenase activity. Predicted to act upstream of or within 10-formyltetrahydrofolate catabolic process; biosynthetic process; and one-carbon metabolic process. Predicted to be located in mitochondrion. Orthologous to human ALDH1L2 (aldehyde dehydrogenase 1 family member L2).

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0004029 aldehyde dehydrogenase (NAD+) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100426-6 Predicted to enable aldehyde dehydrogenase (NAD+) activity and formyltetrahydrofolate dehydrogenase activity. Predicted to act upstream of or within 10-formyltetrahydrofolate catabolic process; biosynthetic process; and one-carbon metabolic process. Predicted to be located in mitochondrion. Orthologous to human ALDH1L2 (aldehyde dehydrogenase 1 family member L2).

Ensembl:

ensembl_id ENSDARG00000070230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053430 False 3053 mRNA 0.50 22 9028819 9048975
TCONS_00053431 True 853 mRNA 0.52 6 9030609 9038678

Neighbor

gene id symbol gene type direction distance location
XLOC_027108 samm50l coding upstream 2826 9011448 ~ 9025993 (+)
XLOC_027107 NA coding upstream 143096 8874565 ~ 8885723 (+)
XLOC_027106 sult4a1 coding upstream 218079 8797197 ~ 8810740 (+)
XLOC_027104 adipor2 coding upstream 290933 8670662 ~ 8737886 (+)
XLOC_027105 NA coding upstream 302368 8716125 ~ 8726451 (+)
XLOC_027110 slc41a2b coding downstream 6513 9055488 ~ 9094690 (+)
XLOC_027111 NA coding downstream 58284 9107259 ~ 9148954 (+)
XLOC_027112 nfyba coding downstream 129022 9177997 ~ 9183602 (+)
XLOC_027113 NA coding downstream 148375 9197350 ~ 9203068 (+)
XLOC_027114 srgap1b coding downstream 230540 9279515 ~ 9335035 (+)
XLOC_027102 BX649324.3 non-coding upstream 525018 8503687 ~ 8503801 (+)
XLOC_027099 CU695020.2 non-coding upstream 894109 8134594 ~ 8134710 (+)
XLOC_027098 NA non-coding upstream 979561 8045442 ~ 8049258 (+)
XLOC_027115 NA non-coding downstream 291852 9340827 ~ 9346703 (+)
XLOC_027116 NA non-coding downstream 297944 9346919 ~ 9352632 (+)
XLOC_027126 NA non-coding downstream 574316 9623291 ~ 9634704 (+)

Expression


Co-expression Network