G802086 (LOC105416325)


Basic Information

Item Value
gene id G802086
gene name LOC105416325
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 38932992 ~ 38934448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU912747
gcacttctcagccttcacaaaaagacaattctctaaaaggcgctggaggacacgtcgaacgtgctgaacatgaatctggagtgacggtgaaaaaatcaggatatcgtcaaggtaaacgaaaacaaagatgttcagcatgtctctcaggacatcattgactaatgcctgaaagacagctggagcgttagcgaggccgaaaggaagaacccggtattcaaagtgccctaacggagtgttaaacgccgtcttccactcgtccccctccctgatgcgcacgagatggtaagcgttacgaaggtccaacttagtgaaaaacctggctccctgcaggatctcgaaggctgaagacataagaggaagcggataacgattcttcactgttatgtcattcagccctcgataatctatgcaggggcgcagagacccgtccttcttcttgacaaaaaaaaaccccgctccggcgggagaggaggaggggactatggtaccggcgtcaagagctacagacaaataatcttcgagagccttacgttcgggagccgacagagagtatagtctaccccggggggggggggtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaattactagaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaattaaaaaagaaatggtttcgctatgattaccagaaacagtgagggttaaaggtagcgtctcacgctgaatcctggggagaggactaccatccagggcgaacaaggccgtgggctcctttaactgtctgagaggaatgtcatgttcccgagcccaggtctcgtccataaaacagccctccgccccagagtctattaaggcactgcaggaagctgacgaaccggtccagcgtagatggaccgacaaggtagtgcaggatcttgaaggagagacaggagtagtagcgctcaccagtagccctccgcttactgacgagctctggccttttactggacatgaagtgacaaaatgaccagcggaaccgcaatagagacagaggcggttggtgattctccgttccctctccttagtcgagatgcggatacctcccagctgcatgggctcagcacccgagccggcagaggaagatggtagtgatgcggagaggggggcgacggagagcgcaagctcctttccacgagctcggtgacgaagatcaacccgtcgctcaatgcgaatagcgagttcaatcaaggaatccacgc

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU912747 True 1457 lncRNA 0.52 1 38932992 38934448

Neighbor

gene id symbol gene type direction distance location
LOC110532015 LOC106566767 coding downstream 91307 38839265 ~ 38841685 (-)
LOC110532016 NA coding downstream 384945 38545204 ~ 38548047 (-)
LOC110532012 cdh4 coding downstream 492162 38052715 ~ 38440830 (-)
LOC110532008 LOC106571920 coding downstream 955643 37961139 ~ 37977349 (-)
LOC110531163 LOC102784363 coding downstream 971605 37953610 ~ 37961387 (-)
LOC110532017 LOC106571931 coding upstream 62063 38996511 ~ 39019461 (-)
LOC110532021 LOC106571935 coding upstream 324040 39258488 ~ 39261833 (-)
LOC110532022 LOC106571939 coding upstream 332877 39267325 ~ 39270815 (-)
baz2a LOC106571938 coding upstream 338374 39272822 ~ 39315559 (-)
LOC110532024 ptges3 coding upstream 391538 39325986 ~ 39334154 (-)
G802082 NA non-coding downstream 15854 38916880 ~ 38917138 (-)
G802069 NA non-coding downstream 46643 38886022 ~ 38886349 (-)
G802057 NA non-coding downstream 72486 38860275 ~ 38860506 (-)
G802056 NA non-coding downstream 73029 38859727 ~ 38859963 (-)
G802054 NA non-coding downstream 75506 38857015 ~ 38857486 (-)
G802092 NA non-coding upstream 22639 38957087 ~ 38957287 (-)
G802094 NA non-coding upstream 23615 38958063 ~ 38958333 (-)
G802096 NA non-coding upstream 24592 38959040 ~ 38959252 (-)
G802098 NA non-coding upstream 30209 38964657 ~ 38966247 (-)
G802123 NA non-coding upstream 92673 39027121 ~ 39027434 (-)
G800318 NA other downstream 1587845 37344395 ~ 37345147 (-)
LOC110531982 LOC106571893 other downstream 2025344 36827882 ~ 36907700 (-)
G798993 NA other downstream 2782355 36150338 ~ 36150637 (-)
LOC110531979 brpf1 other downstream 2953877 35948544 ~ 35979307 (-)
G802100 NA other upstream 32008 38966456 ~ 38996032 (-)
G802138 NA other upstream 116082 39050530 ~ 39061381 (-)
G802149 LOC106581475 other upstream 140033 39074481 ~ 39074720 (-)
G802602 LOC106571943 other upstream 446302 39380750 ~ 39383210 (-)
G802609 NA other upstream 476894 39411342 ~ 39414326 (-)

Expression


Co-expression Network