XLOC_027112 (nfyba)


Basic Information

Item Value
gene id XLOC_027112
gene name nfyba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9177997 ~ 9183602 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053434
GCTCCATTTCCGTCCAATCAAGTTGCAGCGCGAGCGTGAGTCAGATGGACGGAGACAGCAGCACCACGGATACCACTCAGTTAGGAATAACTGGAGAGTATATGGCCGGAGGGACATATGTCTTAGCCCAGGAAGATGATGGGGATGAAAGTTTTAATGACCATGATGATGGAAATGGCAGCAAAGACTTCTTCAGAGAGCAAGACATTTACCTTCCTATCGCTAATGTCGCCCGCATCATGAAGAATGCCGTCCCACAAACTGGAAAGATCGCGAAGGATGCGAAAGAGTGTGTGCAGGAGTGTGTGAGCGAGTTCATCAGCTTCATCACATCCGAGGCCAGCGAGAGATGCCACCAGGAGAAACGCAAGACCATAAACGGAGAGGATATCCTGTTCGCCATGTCCACTCTGGGTTTCGACATGTATGTGGAGCCGCTTAAACTCTACCTTCAGAAGTTTAGAGAGGCAATGAAGGGCGAGAAAGGCATCACTCCGGTTGCTGTTGGCGAAGGCCTTGGAGAAGATCTTACAGATGAGACTTTCACCGGTCAGTTGCCTGCGGGACTGATCACTGCGGATGGCCAGCAACAGAATGTGATGGTGTACACCACTTCATACCAGCAGatccCTGGTGTTCAGCAGATACAATTCTCATGACCGGAGCACAGGCCTGACTGTATCTAGTGACCTGTCCAGCGTCCAGACAGACTTTATCTCTTGCCTTGCAAAGTTTTCAGGTCAGTGCTGGAAGACCAACAAGATGCCTGGTTACCAGAGCAGGAACAAAAAAGTGCCTGTTGCCAGGAAGATGATTTGATCTTAAGTGATGTCTTGTACTTCATTCAGTATTACATTTAGGCCAGTTTGTTTCGCTTGGTCTGCTTTGTACAGGCTACACCaaattatgttgttgttttttttttttgtgtgtgtatgggggGGCGGGGGGATTCCttgtatttaatagtttttaaagttCGGGATGGGGGAGTGGGAACACACAAAAAGGCCATATTGACGTTTTACAGTCCCAAAATTAAGGTAGTTCTCATTTGATCTTAATTAACTTCACCATCTGATATTGTTATGCTgattctttaaataaaattgtgaTGTCTTT
>TCONS_00053435
ATTTCCGTCCAATCAAGTTGCAGCGCGAGCATGGACGGAGACAGCAGCACCACGGATACCACTCAGTTAGGAATAACTGGAGAGTATATGGCCGGAGGGACATATGTCTTAGCCCAGGAAGATGATGGGGATGAAAGTTTTAATGACCATGATGATGGAAATGGCAGCAAAGACTTCTTCAGAGAGCAAGACATTTACCTTCCTATCGCTAATGTCGCCCGCATCATGAAGAATGCCGTCCCACAAACTGGAAAGATCGCGAAGGATGCGAAAGAGTGTGTGCAGGAGTGTGTGAGCGAGTTCATCAGCTTCATCACATCCGAGGCCAGCGAGAGATGCCACCAGGAGA
>TCONS_00053436
ATGGACGGAGACAGCAGCACCACGGATACCACTCAGTTAGGAATAACTGGAGAGTATATGGCCGGAGGGACATATGTCTTAGCCCAGGAAGATGATGGGGATGAAAGTTTTAATGACCATGATGATGGAAATGGCAGCAAAGACTTCTTCAGAGAGCAAGACATTTACCTTCCTATCGCTAATGTCGCCCGCATCATGAAGAATGCCGTCCCACAAACTGGAAAGATCGCGAAGGATGCGAAAGAGTGTGTGCAGGAGTGTGTGAGCGAGTTCATCAGCTTCATCACATCCGAGGCCAGCGAGAGATGCCACCAGGAGAAACGCAAGACCATAAACGGAGAGGATATCCTGTTCGCCATGTCCACTCTGGGTTTCGACATGTATGTGGAGCCGCTTAAACTCTACCTTCAGAAGTTTAGAGAGGCAATGAAGGGCGAGAAAGGCATCACTCCGGTTGCTGTTGGCGAAGGCCTTGGAGAAGATCTTACAGATGAGACTTTCACCGGTCAGTTGCCTGCGGGACTGATCACTGCGGATGGCCAGCAACAGAATGTGATGGTGTACACCACTTCATACCAGCAGatccCTGGTGTTCAGCAGATACAATTCTCATGACCGGAGCACAGGCC

Function

symbol description
nfyba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Is expressed in female organism. Orthologous to human NFYB (nuclear transcription factor Y subunit beta).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016602 CCAAT-binding factor complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Is expressed in female organism. Orthologous to human NFYB (nuclear transcription factor Y subunit beta).

Ensembl:

ensembl_id ENSDARG00000039185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053434 False 1122 mRNA 0.46 7 9177997 9183602
TCONS_00053435 False 349 mRNA 0.50 4 9178002 9180681
TCONS_00053436 True 629 mRNA 0.50 6 9178913 9183153

Neighbor

gene id symbol gene type direction distance location
XLOC_027111 NA coding upstream 29043 9107259 ~ 9148954 (+)
XLOC_027110 slc41a2b coding upstream 83307 9055488 ~ 9094690 (+)
XLOC_027109 aldh1l2 coding upstream 129022 9028819 ~ 9048975 (+)
XLOC_027108 samm50l coding upstream 152004 9011448 ~ 9025993 (+)
XLOC_027107 NA coding upstream 292274 8874565 ~ 8885723 (+)
XLOC_027113 NA coding downstream 13748 9197350 ~ 9203068 (+)
XLOC_027114 srgap1b coding downstream 95913 9279515 ~ 9335035 (+)
XLOC_027115 NA coding downstream 157225 9340827 ~ 9346703 (+)
XLOC_027116 NA coding downstream 163317 9346919 ~ 9352632 (+)
XLOC_027117 ipo8 coding downstream 176930 9360532 ~ 9389359 (+)
XLOC_027105 NA non-coding upstream 451546 8716125 ~ 8726451 (+)
XLOC_027102 BX649324.3 non-coding upstream 674196 8503687 ~ 8503801 (+)
XLOC_027099 CU695020.2 non-coding upstream 1043287 8134594 ~ 8134710 (+)
XLOC_027126 NA non-coding downstream 439689 9623291 ~ 9634704 (+)
XLOC_027129 NA non-coding downstream 543193 9726795 ~ 9730672 (+)

Expression


Co-expression Network