G801927 (LOC106581475)


Basic Information

Item Value
gene id G801927
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39074471 ~ 39074715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU912582
catggagtctgtttctgaccgtttgagcagacacatgcatttgtggcctgctggaggtcattttgcagggctctggcagtgctcctccttgcacaaaggcggaggtagcggtcctgctgctgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtaacgcctccatgctctggacactacgccgacagacacagcaaaccttcttgccacagctcgcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU912582 True 245 lncRNA 0.58 1 39074471 39074715

Neighbor

gene id symbol gene type direction distance location
LOC110532019 LOC106571933 coding upstream 2086 39064150 ~ 39072385 (+)
LOC110532013 LOC106571930 coding upstream 164753 38886624 ~ 38909718 (+)
LOC110532014 LOC106571929 coding upstream 189824 38868269 ~ 38884647 (+)
LOC110532011 LOC106571923 coding upstream 1041248 38021681 ~ 38033223 (+)
LOC110532009 LOC106571922 coding upstream 1094642 37977424 ~ 37979829 (+)
LOC110531165 LOC106571934 coding downstream 36640 39111355 ~ 39237408 (+)
LOC110532020 LOC106571937 coding downstream 165464 39240179 ~ 39256626 (+)
LOC110532026 LOC106571943 coding downstream 300653 39375368 ~ 39383225 (+)
ddx23 LOC106571944 coding downstream 326320 39401035 ~ 39411199 (+)
adcy6a LOC106566714 coding downstream 391216 39465931 ~ 39513879 (+)
G801924 NA non-coding upstream 369 39073675 ~ 39074102 (+)
G801920 NA non-coding upstream 29323 39044898 ~ 39045148 (+)
G801915 NA non-coding upstream 37228 39036987 ~ 39037243 (+)
G801913 NA non-coding upstream 38756 39035409 ~ 39035715 (+)
G801907 NA non-coding upstream 48085 39025915 ~ 39026386 (+)
G802158 NA non-coding downstream 12896 39087611 ~ 39087840 (+)
G802169 NA non-coding downstream 22779 39097494 ~ 39097781 (+)
G802222 NA non-coding downstream 132822 39207537 ~ 39207784 (+)
G802231 NA non-coding downstream 140596 39215311 ~ 39216363 (+)
G801851 NA other upstream 140603 38932952 ~ 38933868 (+)
G801778 NA other upstream 286117 38788061 ~ 38788354 (+)
G800834 NA other upstream 1003038 38070216 ~ 38071433 (+)
G799858 LOC106571908 other upstream 1504060 37567245 ~ 37570411 (+)
G802324 LOC106571945 other downstream 341160 39415875 ~ 39417460 (+)
spryd4 LOC106571951 other downstream 564539 39639241 ~ 39640889 (+)
G802821 NA other downstream 714942 39789657 ~ 39790402 (+)

Expression


Co-expression Network