XLOC_027115


Basic Information

Item Value
gene id XLOC_027115
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9340827 ~ 9346703 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057616
cgctggagctcagctctgttcaaatggctctgcagcgagcaccctctcaaaatTTTGACCGTTTTCAGCAACCGCTTGAAAAGTCATGTTCAACGAACTTTAAAACAATGAGTTGCATTCAATCTTGGTAATATTGAAATGTGGTTTCAAAAGTGTTAATGCGGTAACACTTTAGGATAAATGTACGATATTACGATAAATACTGATATCACTGTTAtgataaatgttaattaatgcatttactaacataaacaatgaacaatacatttattacactttgtttattacttattgtaaagtgtgaccgtttaTATAGCTAACATTAGCTTTCTATGTGATAAATTGCACTGATGGAGGTTCTAAAACTATTGGCAGGCGTACACATTTTCTGCCATGTTTGCACCACAGAAAATCAGAATGACTTTAGTTATAGAAACCCCTTTTGGGTGGACTAAATTAGCGCTGACTTAAAAGGGTCTAACCAGCACAACAGAAACTAGAGTAATGATGTGTGACAcaaatatgatattttaaatagttatgatatttttaagacattgaAAATGTGTGTAGATTGTGTACAAAATGTTagatatttgattattttaaatagttatgaTTTTGTACTATTaaaaattttaagtaatgtcacaTTACTGTAGTTGTATTGTAATTTTTCTCATTTGTTTTAAtcgtgtacatttttatttttatttttattttaatgggtCAAATCTGTGGCAATGTTAGGACTGggctgataaacgatattatatcgaattgTGATAACATTTATGTCAGTAATAATGATAAGCACTGCACTTTATTACTCTATAATGATGCAAAGAGCCAATCATACAGAAGAAATGTAGAACAATCGAAAAGTGTGTTGACATTTTCGGCCACTGAAAAGTTATTGGGCAAAAATATGTCATGCCATTAAATGGACTctttggaagcattaacaacttacatagaaatatatatcgttatcgttcaatatgaaAAACAATTATCGAGATTACACTTTaaccatatcgcccagccctaggcaatgttattattattattttattaaatgggaGGAACTGGTCACTTTATGGTTACAGAAAGAGGCTTAAATAAGTCCAACACCCACAAAATACTCAAGCATTTATCCAAATCATCCAGTGCTACAAGGACATATCTCTcacacgcacaaaaaaaaaaaaaaacacataaataatgtcaaattaatcattttcattttaaatacagaTCCGTTTCTGAAATTATTGGTCATTAAAACTTAACtatagttataaaacattattgaatAGTATAGTTCAACTACTAAAGTCATGCTGAAAAAATTCTGCTTCTTATATGGCATTAATCGTAGCAGAGAAAAATGGCAGTTCAGCTCTACATGAAATGGAATTTCTGTATCAAGGAGACAATGTAAGATGGTGGAGGATTGTCAGCATCTCTGTAATCCTGCAATCTGTGTGTCCTGTTTGCTGCGCCAGCCTGTTCTCTTTGCTCATTAGCACTGGAGAAAGTCATGAATACTGCAGGGCGGCGTGGAGCTCATTACATCTCCTGCGTTCAGCAGCAGCGTGAAAAATTCTTCACCCCTGACTGATCATTAATTACATGTCTTAGCTGGCAGCCGGAAAAGAGTGAGCATGAGGAAATgacaaagagagaaagaaaagtcAGCTTATTCAGGGAAAAATGGCTGACGGAACAATGCTTTCTGTTGCAGTTGAAGACATGTGAGCAGAGCATCCGTGGTGAAAGATTGGGGCGGGATTTAAATGTTTGGCCAGCCAATAGAAGGTAAGGAAACCTGTTTGGAAATAATCAATATTGCAGAAAATTTCAAGGTCATGCACTGATTTCTCAATGCTGGCAGGGCCTGAATCTCTGCTGACTGATTAATTGATCTGATAACATTTGCGAGATCTTGTCTTCTACCTCAGCAAGGACACAATGACCGTCCATGTTATTACATTCCTTGAGCACTAACTGTTTGCAAACTCTTGTGTTTTCAGCACAATAGATGAGCTGATGTCTGATTTATTTTGACTGCATTTGCTAATACAATACTGTATTACTGTAGATATACTTGACCACTTCAAATGAATGCATTAGGGTTGTCTGAATTATtagtaatttaacttttttccTGTTTTCTGCCAGTTTAATTTTCCATTGGTTTTGCACAAGCAATTATAAGCAAGTTATAGCCGTTTCTTTATATACGTTGATGTACATGATTAGAAAGAAGGGTTTTCTTTGTTATTCGTGATATTAGTTCATGTAAATAGTATTTTGACAGATAGTTTTTTAATCATCAGGGATCCCAAGTTTTTctgaaagtacttgaatttcagaaATATGatttcaaggcctggaaagttcttaaaagcaaacataagtcattgaaagtgcttgaattgaaagtttatagtgttatttcaacaattgtactgGGCTTCTTGCACaaattgaacaaaaaaatgaagaaattcttaaattaaaaatcttaGACATAAATTACGACAAATAATGCAATTAACAACACTTCAGAAACTGCATTTTAATATTACCAGGATTGAACTCACCTAATTGTCTTAAAGTTCTTCGAACAAGACTTGGAAAAGGtcaacatttttgaaaatgacacattCAAAACATCATTATTATGacattaatgtaaatattaagggtaaatgaaatgttaaatacaGGAAGGACTTTCATGGCGCAGTGGGTGTGAATTACAAAGATtcttaattttaaatgattagtgATTTCAAAAGTCCTTGAATTTGGTGAGCATTAAACAGTGGGAACCCTGAATCATACTTGGTCACAGCAACAGAAATGGGTCGCTTAGTCTAGAGTGCAGGTTTATATGTCATGCCCCTGCATCAATAAGTACTCATTGTTTTGTATCCTATGTTTTTTACTGACAGTCATATGTTGATGAATTAATCACATCTAGAAATTCAATAAAGGTcttgaatctctctctctctttaaaattTAGAGTTGCTGTTGAATTTGCATAATATGAATAAATAGGAGTGAATGTAAGAGAAGCTTTAGtgatagtgaatgagtgtgcaaaTGTTATTAATTTGTGAATTGTTTGTCTTGTATAATTGTTATGAGAAGTGATATGTTTTGAGAAATGGTGTATATTGAAAGGGTTTTAAaagtgtgtgtctctctctctctctctctctatcttcaGTGAAGTGCAGAGTTCACCTTGAGCCGTCCGCATGACTGAGCTCTACAACAGATGTCATTAAACAGGTGCTCATGTACTGATTTATCATACATCATTCCTTTCTACATTAGAGTTTCTGACAGCactgtacttttattttaaggtgcAAATCATTTTGGGTatttttaaggtgtccttgtacTTACTATGGTTATACATTCCATGTGCTTACTaaagtaattacaattaattatgatTAAGTTAGATGCAACTAACTCTAAACTCAATTCACATTCCAACCCTGTAAGTAagtacatttaattaatattactcagtaataaaataaacaattacctactttttgtgtgtgttatgtaAGGATAGGAAAACTGCGATTATGCCATTTTGCCtcaaaagacaaacaaaatgcCAATTGAAACTAATTAAATCATCAAAATATTAACATATCTATAGGcgaattaccggtttgtaaacattcaggatgcgcgcgcagcgaggttgcagaaaaaaaacaggagcactagcatttacagcgagggaataaCATGCGATGCGATACAGAGTTTGTTGCTGTGTTAGAGATAAGATATGttgattatgtattatttatattatttacataatgctttcagcatattaaaacagcttgtcactcagtgataagcacagtttttcagcaaaattaacaataaagtgattggcgttcgtctgacaggtccatttgtgatagcaccctcccaatgaatattggataggACAagaagcatccagccccaaatttactcatctcattgaagctccacgTGTTGTAACGAGAGAAGTTAAAGGCTTACAAGTCTTTGGATACCTACAATTTTTTTCTGTGgtgtcatgtgcaagaaataatgttacATGATTActagattcaaaactatgtagtgctaaaaactgaggttctgcctagccacaGAAAAGAAGGCAGACGTGTATAaagcctgggtaatcatcaacaagcaaaataaatgcgttctgacagtgaactgcacctgtacggcagggtatgcggaaaaacatttttacatttcaatctaagcattcagtgtccgcagtttaatgaaccatatttaattgtttttgctgaaatcattgctgcaatcaaaaacgtgTAATGTGAATGATTCAGCAtagtgtgaacttacctgatataacatgagaactgcagagtccagcatttttaattaggtcctcactccattcagctcttatgatggctgttagccaaagacatctgcgattggcattaaaagcagtgtggtgtacggtaaaatttaagttttctatttttggactttcaaTTTTGGCATcttaccgcacaacacgacatgtttgctattgcaaccgatCTTTATTGCAACTGGTATGCGTGATTAAATCCGTGTGACCTAGGTTGGTACCTcccctatccgcttgttaagtgtgaggTCATgcgaagcagcttccgggtccaagcgctctattcaactgtatggggagactcatgaaatggtaattataaacgtttacaaagcgatttaatactttcgaaaatcacgatcgcaatatatatgtccatgcctaatatccgatggccagaaagtcattctttttttataaattgttaaaattttggtatttgtgatgcagcaagcccagagattgttgtgcacaccatgactttatataaaatgaactttattgtgtgatatgaattaaaagtgatcataaacaaatagtttctcaactcaaatgagtggcggcttggacccggaaacagtattacatacttCACCAACACATCATcgcttaacaagcggatacatcTAAAAATATCAATACCATTAAATGTAcgaaaaaaagtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatatatatatatatacttgtagtttttatatatatagatatatagataatctttagataatattttgtattgtgtattttagataatcttatttaatgtttatatattatacctGTTCTATGTAATACTGTATTAATTACTTCAAATTATACCTAAATAATTTTGAAATATCTCATTTGGATAGATATATTACCTTATAACTAAATGTGCAtatgaaattatataaataaatgtgtacaaCACcgctaaatatacaaaaaaacattatatatatatattttttttttcaacttatttaatGGTTATACTATTCCTGTGCTGTCATACTGCATTTACTTTTAATAAGTCTGAAATAACCTTGAAAAATCTCTTGCTTTAATAGATATATTACCTTATAACtaattatgcatataaaatgATATTAATAAGTGTGTACATAAATGACAATGAATTCAAACAAGGTAAGCCAAAGCTCCCTCTGGTGGTATAATTAATACAAAACAACAACTGAGACACTCCCAAAACACACACCTAAATGATCTTCATAATCCCATAGTTTCTTAATCCACTTGTTTACTAATTCTTTCTTGCAGCAGGTCAACAGGCGGTCTCTCACCTGGAGCTGTATTTCTGCAGGATGCTGTCCAGCGCGCCCACCAACTCCTCAGAGTTGACAGTCTTCTGG
>TCONS_00057617
TTCTGAAATTATTGGTCATTAAAACTTAACtatagttataaaacattattgaatAGTATAGTTCAACTACTAAAGTCATGCTGAAAAAATTCTGCTTCTTATATGGCATTAATCGTAGCAGAGAAAAATGGCAGTTCAGCTCTACATGAAATGGAATTTCTGTATCAAGGAGACAATGTAAGATGGTGGAGGATTGTCAGCATCTCTGTAATCCTGCAATCTGTGTGTCCTGTTTGCTGCGCCAGCCTGTTCTCTTTGCTCATTAGCACTGGAGAAAGTCATGAATACTGCAGGGCGGCGTGGAGCTCATTACATCTCCTGCGTTCAGCAGCAGCGTGAAAAATTCTTCACCCCTGACTGATCATTAATTACATGTCTTAGCTGGCAGCCGGAAAAGAGTGAGCATGAGGAAATgacaaagagagaaagaaaagtcAGCTTATTCAGGGAAAAATGGCTGACGGAACAATGCTTTCTGTTGCAGTTGAAGACATGTGAGCAGAGCATCCGTGGTGAAAGATTGGGGCGGGATTTAAATGTTTGGCCAGCCAATAGAAGTGAAGTGCAGAGTTCACCTTGAGCCGTCCGCATGACTGAGCTCTACAACAGATGTCATTAAACAGGTCAACAGGCGGTCTCTCACCTGGAGCTGTATTTCTGCAGGATGCTGTCCAGCGCGCCCACCAACTCCTCAGAGTTGACAGTCTTCTGG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0016477 cell migration biological_process
GO:0001525 angiogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057616 False 5877 lncRNA 0.33 1 9340827 9346703
TCONS_00057617 True 712 lncRNA 0.44 3 9342090 9346703

Neighbor

gene id symbol gene type direction distance location
XLOC_027114 srgap1b coding upstream 5792 9279515 ~ 9335035 (+)
XLOC_027113 NA coding upstream 137759 9197350 ~ 9203068 (+)
XLOC_027112 nfyba coding upstream 157225 9177997 ~ 9183602 (+)
XLOC_027111 NA coding upstream 191873 9107259 ~ 9148954 (+)
XLOC_027110 slc41a2b coding upstream 246137 9055488 ~ 9094690 (+)
XLOC_027116 NA coding downstream 216 9346919 ~ 9352632 (+)
XLOC_027117 ipo8 coding downstream 13829 9360532 ~ 9389359 (+)
XLOC_027118 tmtc1 coding downstream 47723 9394426 ~ 9466248 (+)
XLOC_027119 zgc:55888 coding downstream 120346 9467049 ~ 9476418 (+)
XLOC_027120 lmf2b coding downstream 131797 9478500 ~ 9502846 (+)
XLOC_027107 NA non-coding upstream 455104 8874565 ~ 8885723 (+)
XLOC_027105 NA non-coding upstream 614376 8716125 ~ 8726451 (+)
XLOC_027102 BX649324.3 non-coding upstream 837026 8503687 ~ 8503801 (+)
XLOC_027126 NA non-coding downstream 276588 9623291 ~ 9634704 (+)
XLOC_027129 NA non-coding downstream 380092 9726795 ~ 9730672 (+)
XLOC_027131 NA non-coding downstream 521207 9867910 ~ 9889097 (+)
XLOC_027135 NA non-coding downstream 711398 10058101 ~ 10061448 (+)

Expression


Co-expression Network