G802399


Basic Information

Item Value
gene id G802399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39558265 ~ 39562731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU913111
CTTTATTGTTGCTTTTgagataaataaaacatttgaaaacaTGTAAACTGGTAGGCATATTATTAATAGAAAAACAAAGGTAAgatcacatacacatactgtagctacattaattacatcaacaacaatagGCAAGACTCTGTAATCACGATCAGAACATTATGCATATTCCTTACTTGCAGCATTTTATTTACATTCAATTTACATGTTGATGATACTGTTGTGCTTGAGAATAACACTACACAGTTACACACTATCATATAACTCCCATTTTCCTATGGGAAAGACATCTAGCATGGTTATATGAGGCATGAGTGATAAGAGATTGGCTTCATCATTCGTAGGTGTTCCTAACTACCTCCAATGGTTCATAATAAAATATATTGTAGTAACAGTGGTCCAATTGTTTAACATTGGGGAATCAGGCAATATTACCATTGTCAAAGAGGTGGTTTGACATCTGTCATCGTAGTTCTATCTAGTCTATCCGTTTAGCTCTAAAACTATTAACAAAGAAAGCACCATTTGGACTTTTATTTCTTAGAAAATGGTGAACAAACTTTTCAATTGAAAAATGTATTGGTTTTTACACTATAATACATTATGAAAATGCAACTTCATTGAATTGTGTCAACTTGACCAATTGGACAGAGGGAGTCAATTAGAAAACGGGCCAATTTCATGACTGTTATTCATCAACTTGAGAAAGTGTATTACTTTTgaagtatcacacacacacgtacattcaAAACACAAATAGACACACTCAAAAAAAGCAtgcacccccccacccacacacaaccatacacataAACAGACAACAGATGTAACATGGACAAACATGCCAATATACTGCTTACAGATAGCACACAGTTTATGATGACATACATGCAACCCAGTGGTGAGCCCTGAAGATCTCATCACACATTCAACCAATATCTGCAAGTtgatcagaggacatttcccaCTATCACACAACCAAAGCCAAAATCCCTTAGTCCTGGCTTCTATATCTACATGTAGCCCGAGTAAAATGACATTCTCAGAAGACAATACAAGAACAATTGTATTTtgtactgaacaaaactataacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaaaatcagaaaaatgttccataagcacaaaaatgttgtgcacaatttgtttacattctttttagtgagcatttcttatttgccaatataatccatccgcctgaccggtgtggcatatcaagaagcagattaaacaAGCATGATTAttacagaggtgcaccttgtgctgcagacgataaaaggccactaaaatgtgcagtttttcacagaacacaatgccacagacgtctcaagttttgagggagcatgcaattgtcatgctgagtGCAGGAAAGTcccccagagctgttgccagataatttaatgttaatttctcaactataagctgcctccaacgttgttttacagaatttggcagtacgaccaaccggcttcacaaccacagacaacGTGCAACcacaccaggacctccacatccggcttcttcacctgcaggatgatctgacaccagccacccagacagctgatgaaactgaggagtatttctgtattctgattggctgggtctggTTCCCAAGTGGgtggcctatgccctcccaggcccacccatggctgctaccctgcccagtcatgtgaaattcgtagattagggcctaatgaatttatttcaatttactgatttccttatatgaactgtaactcattaaacattttgaaattgttacatgtttaGACTAAATATTTGACGTTGTGGGCTGCAGTAATTATCATCAAGCAAGCTATACGTGGCTATCACTAATCTTGCACCAGTGGAGATCTAAGTGCTATTGAAGTGTTACGCATTACCCATCATCAAGATTCTGTACAAATAAGCTTTATACTCTGACATCTGTCTACTTCTGAATGAAACTGAAATGCTCCACTTCCTTACTACCTTGTGTTCTAATTGGCTCAGCAGGTGAAGTCCTCTGAGTTGCTCCGCTCTGTGTGATAAGGTAGCATATTGGCAGAGTATGGAGGTGGTGGATGGGAATTGTCACGGAGAGACTGGGGTGGATAATGTGAAATGGATAGTTGGTGACAAAAAAAGAGTGGGAGTATGAgccaataacaaaacaaaaagacaAGTTAAACTTAAAGGGTAGGAAGCATGAGTTCTTACTCACCAATGTAACAACACATTGTGATCAAAGACTTAttgtaaactgggtggttcaagccctgaatgctgatcgtctgacagctgtggtatatcagaccgtataccacaggtatgacaaaacatgtatttttactgctctaatgatGTAGGTAACCCGTTTATAATAGCAATTAGGCACCTCGGTGGTTGTgatatatagccaatataccacggctaatggctgtgtccaggcaatccgcgttgcgtcgtggttaagaacagcccttagccgtggtatattggccatataccacacctcctcgggccttattgcttaagtaactTAGTTGTAATCACGATCTGGTTACCTATAAGTACAAACATAGTTATATATTTGGGTTATTACATGTTTATAAACTTATTTACGGATATATTCTaaactacccacaatgcactattTCTCACTGTAATATGGATAATCTACTCTGTGCTATCGTTAGCCATTAGCCATGCTAGCATGTAATTACATTCCAGACCAAGTGTTGATGGTGGTGAGCTACAGTCCACCAATCAGAAGGAAGTGTGATGTAAACAATGAACAGATGGGGCACGTGCGGCCATGCTGCATCATGATGCTCTCCATCGACTTTGTGACTGTGTTATGGTGCCTTCTTGCTGTGGGCtcaaaaagaaagagaaaatcaAACCTGCTTGCTCTAATTGTGTAGTACCGCATTTGttctttttgttttgtcaactttTCGGCATGTTCTCTGGCTACAGGAGTTTTGTAACTTTTTGCACCTTGGCTCGGTGCTAGCCCACTAGCTGACTGACATCTGTAATCTATCAATTTTGGATTTTTCTCACTATATAGTAATTGGATTCTCCTGACTCTTCCTCCCTGGTGAAGCGCCCGGCTCCCCCTTGCTTTGATAGCTAACTCCGCCTGTACTCTTTTAAAAGTGTTACTATCGGATGGGCCCCAGCCATGAATCTGTAAGTCTCTACTCTTTCTTTGCTTTTGATCTGCGGTTATAGTGGTGATGTGTTTTTGGTGGTTGGCTAGGCTGGCTGGGCTAATAGCTAGTGTGCTAAATAGCTATCATTACCTGGCTGGCTAAGATAACTTCATACTGTATAGCTACCATTATTTTGATAACTGGTTAGGTGGCGTTGTGTATTTTCAAAACGTTGGTTTACTTTAATGTAGCAGTAAGCTAGGTGTTGATAGCAACTGTCTGACTCATTCAGTGCTAACATGAcgttagcaggctggtagggcTAACATTAGCAGGCTAGTAGTGATACCATGAATAGGCTAGTTGGCTAGCAAACTTACACTTTGATTTGTAACAATCATTTCATAAAGTATTTGTTTGTAAGTTGGCCGAAAAtgtcattgaaaccagtagtcatGAGTGCATTTGGACTTTTGATACATATTTTAAGGAAAATCCATATGTTACATGTGGTTATGTTTATGCTACCTACTCTGTAAACTCATGAAAGACACCCAGTGAGAAAAGCAGAGTTAAGGGCCAACATAGTCATGCATTTAACATTTAAAAGTGTATCCTTTTGTAGATATGCtttaatcatttttagaaagCACCCTTTTAAATTAGACACTAAGATTTTAAGATTCCGATTTTTCAAAAAATATAGATGAGACAacttgatggaaattgatggggTGAAGACATGTTTCTCAAGCTGATACACAACACCACAAACTCCATTGATATCCATTTTAACCATACTGTTGCTCAGAAAAAAATATCAACTTCAGTTTTGGAGATAATACTTTTCTATATTTGGATCTTTGATTTGGTATTCCATTGTTCTGTTGCAAAGCAATTTACATTAGCCAATGAAATCTAAGGGATGCATGTGGATCATTGGATTGGTTGTCTTGTATCCTGCTGTGTGCAAGGTAAAACTAGGAatatccccacacacacattcatgaacCTCACCAGGTACGTTCATTTAGAACACATTTTCTTTTACAAAAACAACCTGGCTTCATGCATATGAAATTCTTAATCGAGATGTTTAGACATGAACCAATATGGCTGCCTTCTTCCGAGAGCTGCAAATGCTTAGTGAAAGTTACTGACGTGACATTTCACATCGTCCAGGCTCAGAACAGCTCCCTGGTCGTTGTTGCTG

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU913111 True 4392 lncRNA 0.39 3 39558265 39562731

Neighbor

gene id symbol gene type direction distance location
g6pd LOC106571947 coding upstream 15599 39531459 ~ 39542666 (+)
adcy6a LOC106566714 coding upstream 44386 39465931 ~ 39513879 (+)
LOC110532032 NA coding upstream 54624 39501253 ~ 39503641 (+)
ddx23 LOC106571944 coding upstream 147066 39401035 ~ 39411199 (+)
LOC110532026 LOC106571943 coding upstream 175040 39375368 ~ 39383225 (+)
spryd4 LOC106571951 coding downstream 76510 39639241 ~ 39640889 (+)
LOC110532038 LOC100286410 coding downstream 123097 39685828 ~ 39715886 (+)
map3k12 LOC106571953 coding downstream 168217 39730948 ~ 39747079 (+)
stac3 LOC106566701 coding downstream 287020 39849751 ~ 39855939 (+)
LOC110531167 LOC106571970 coding downstream 303152 39865883 ~ 39873666 (+)
G802392 LOC106571950 non-coding upstream 1600 39554187 ~ 39556665 (+)
G802328 NA non-coding upstream 42227 39436366 ~ 39516038 (+)
G802353 NA non-coding upstream 88833 39447083 ~ 39469432 (+)
G802325 NA non-coding upstream 142547 39414725 ~ 39415718 (+)
G802764 NA non-coding downstream 112282 39675013 ~ 39675349 (+)
G802778 NA non-coding downstream 153702 39716433 ~ 39716670 (+)
G802811 NA non-coding downstream 212736 39775467 ~ 39775699 (+)
G802820 NA non-coding downstream 225165 39787896 ~ 39788238 (+)
G802831 NA non-coding downstream 251444 39814175 ~ 39817115 (+)
G802324 LOC106571945 other upstream 140805 39415875 ~ 39417460 (+)
LOC110531165 LOC106571934 other upstream 321004 39111355 ~ 39237408 (+)
LOC110532019 LOC106571933 other upstream 486040 39064150 ~ 39072385 (+)
G801851 NA other upstream 624397 38932952 ~ 38933868 (+)
G802821 NA other downstream 226926 39789657 ~ 39790402 (+)
G802822 NA other downstream 229186 39791917 ~ 39792333 (+)
G802830 LOC106571955 other downstream 247596 39810327 ~ 39812025 (+)
LOC110532068 LOC106571971 other downstream 824034 40375272 ~ 40393967 (+)

Expression


Co-expression Network