G802900


Basic Information

Item Value
gene id G802900
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39917139 ~ 39949106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU913652
ccataatatggacctggtcttttaccaaatagggctacacaacttgtcacaacacaactgattggctgaagcgcattaaggaaagaaattccacaaatgaacttttaacaaggcacacctattaattaaaatgcattacaggtacctcatgaagttggttgagagaatgacgaGTGtacaaagatgtcatcaaggcaaagggtggctactttgaagaatctcaaatatattttgtttaacatgattccatgtgttatttaatagtcttcactattattctacaatgtagaaaagtcaaaaagaagaaaaaccctggaattagtaggtgtgtccaaacgtttgactggtactgtatgtctggcTGCCAATGCCGTGTGATGAGTTTTTACAGACGGGAGTTACTCCTAGGCGAGTTGCCCTATGATGCTGCCAGCTTTACAATAACTACAAAAGTTTGCCCAAACATTCAAATCAATCATATACTTATCCCTCTCCTTTGACATGTTCGAAGCTTGCTGTGGCAGAGAAGCAACACTGAGGGGTGTTatcgtgccttcagaaaatattcatacccctttactttgtccacattttgttgtgttatcgcctgaatttaaaatggattctgTTGAGATTTTTGCCTCTGGCATACATACAATACCAAATGTCAAAGTTAAattgttttttgacatttttactaATTCAGGGAAAAAAAATGtacagctgaaatgtcttgattcaGTAAGTTCTCAGCCCCTTttttatgacaagcctaaatacatTCAGGAGGAAAGATTTGCACGTCAcctaataagttgcatggactcactatgtgtgcaataatggtgttgaacgtgatttttgaatgactacctcattttTGTatcccacacatgcaattatctgtaaggtccctcagtcgagcagtgaatttcaaacacagattcaaccacaaagaccagggaggttattCAGTGCCTTACAGAGAAGGGCACCTATTCCAAGataggtaaaaaataaaacattgaatatcccttcgaGCATgttaaagttattaattacacattgggtggtgtatcaatacaccctgtCACAACAAAGAtaaaggcgtccttcctaactcagttgccggagaggaacgAAACTGCTCCGGGATTTCACCATTAgggccaatgttgactttaaaacagttacagagtttaatggctgtgataggagaaaactgaggatggatcaacaaccttATAATTACTCCAAAATACCttaaagaaggaagcctgtacagaataaaatgttccaaaatatgcatcctgtttgcaacaagactcaagtaatactgcaaaaaacggAGCAAAGCAATTACATTCTTCTCTAGATGTGGAAAGCTTTTGTTCCAAGACTCCCAGcagtaatggctgccaaaggtgcttctataaagtattgactcttgtgtaaatgagatatttctgtatttcattaacaatacatttgctaaaatttctaaaaacatgttttcactttgtcattatgggatattgtgtgatGGGTGggcttttttattttaatttaatccgttttgaattcaggctgtaacacaacaaaatgtggaataagtcaaggggtgtgcatactttccaaatgcactagaAACAGCATATCTCTTATGCAAAACACTGATAacaacattattttttatttgcgATCTGCTGAATATGGTTTTATTGTAACTAAAATGTTGTTCATGGCATTATAGGAAAGCAGTGCTATTTCAGAGGGacaacccagctagcacataatgttctgagaaccatatgtttcctagagcttggtgagaacgtggttgtcctatggttatttttgcatacaaccttcccacaactttctcgGAATGGTGCAAGATAGTTGTTTGTCTGTGAAACATtttcagcacatttaaggaacttaacaaaaatacattattttcttggcatttcattactttaacaggatgtttcctaaaagttcaaacatggttacatttcatttcaattttgGCAATGCTCTAagaacgttctccaactggtttgacattagGAATGCTCTAAAATATTTCAGAGAAGGTTAAGTAACaacattcttctgtgggaatttcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU913652 True 2133 lncRNA 0.37 2 39917139 39949106

Neighbor

gene id symbol gene type direction distance location
LOC110531167 LOC106571970 coding upstream 43473 39865883 ~ 39873666 (+)
stac3 LOC106566701 coding upstream 61200 39849751 ~ 39855939 (+)
map3k12 LOC106571953 coding upstream 170060 39730948 ~ 39747079 (+)
LOC110532038 LOC100286410 coding upstream 201253 39685828 ~ 39715886 (+)
spryd4 LOC106571951 coding upstream 276250 39639241 ~ 39640889 (+)
LOC110532054 NA coding downstream 12365 39961471 ~ 39962986 (+)
LOC110532055 gnas coding downstream 63990 40013096 ~ 40046553 (+)
LOC110532057 LOC106571964 coding downstream 107702 40056808 ~ 40063855 (+)
LOC110532060 if2b coding downstream 126746 40075852 ~ 40085818 (+)
LOC110532058 LOC105026338 coding downstream 136905 40086011 ~ 40090648 (+)
G802875 NA non-coding upstream 23008 39881194 ~ 39894131 (+)
G802831 NA non-coding upstream 100024 39814175 ~ 39817115 (+)
G802820 NA non-coding upstream 128901 39787896 ~ 39788238 (+)
G802811 NA non-coding upstream 141440 39775467 ~ 39775699 (+)
G802778 NA non-coding upstream 200469 39716433 ~ 39716670 (+)
G802919 NA non-coding downstream 1695 39950801 ~ 39951044 (+)
G802920 NA non-coding downstream 2025 39951131 ~ 39951528 (+)
G802922 NA non-coding downstream 3316 39952422 ~ 39954470 (+)
G802925 NA non-coding downstream 11449 39960555 ~ 39960856 (+)
G802830 LOC106571955 other upstream 105114 39810327 ~ 39812025 (+)
G802822 NA other upstream 124806 39791917 ~ 39792333 (+)
G802821 NA other upstream 126737 39789657 ~ 39790402 (+)
adcy6a LOC106566714 other upstream 443582 39465931 ~ 39513879 (+)
LOC110532068 LOC106571971 other downstream 437659 40375272 ~ 40393967 (+)
G803437 selenok other downstream 493790 40442896 ~ 40449939 (+)
G803457 NA other downstream 518522 40467628 ~ 40468002 (+)
G803728 NA other downstream 1071830 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1485778 41423598 ~ 41452922 (+)

Expression


Co-expression Network