G803170 (LOC106571959)


Basic Information

Item Value
gene id G803170
gene name LOC106571959
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39944080 ~ 39949140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU913974
AAATAGAACCAGAAGGAAACGTTatactgaagtactgaaattcccacagaagaatgttGTTACTTAACCTTCTCTGAAATATTTTAGAGCATTCctaatgtcaaaccagttggagaacgttctTAGAGCATTGCcaaaattgaaatgaaatgtaaccatgtttgaacttttaggaaacatcctgttaaagtaatgaaatgccaagaaaataatgtatttttgttaagttccttaaatgtgctgaaaATGTTTCACAGACAAACAACTATCTTGCACCATTCcgagaaagttgtgggaaggttgtatgcaaaaataaccataggacaaccacgttctcaccaagctctaggaaacatatggttctcagaacattatgtgctagctgggttgtCCCTCTGAAATAGCACTGCTTTCCTATAATGCCATGAACAACATTTTAGTTACAATAAAACCATATTCAGCAGATcgcaaataaaaaataatgttgtTATCAGTGTTTTGCATAAGAGATATGCTGTTtctagtgcatttggaaagtatgcacaccccttgacttattccacattttgttgtgttacagcctgaattcaaaacggattaaattaaaataaaaaagccCACCCatcacacaatatcccataatgacaaagtgaaaacatgtttttagaaattttagcaaatgtattgttaatgaaatacagaaatatctcatttacacaagagtcaatactttatagaagcacctttggcagccattactgCTGGGAGTCTTGGAACAAAAGCTTTCCACATCTAGAGAAGAATGTAATTGCTTTGCTccgttttttgcagtattacttgagtcttgttgcaaacaggatgcatattttggaacattttattctgtacaggcttccttctttaaGGTATTTTGGAGTAATTATaaggttgttgatccatcctcagttttctcctatcacagccattaaactctgtaactgttttaaagtcaacattggcccTAATGGTGAAATCCCGGAGCAGTTTcgttcctctccggcaactgagttaggaaggacgcctttaTCTTTGTTGTGacagggtgtattgatacaccacccaatgtgtaattaataactttaacATGCtcgaagggatattcaatgttttattttttacctatCTTGGAATAGGTGCCCTTCTCTGTAAGGCACTGaataacctccctggtctttgtggttgaatctgtgtttgaaattcactgctcgactgagggaccttacagataattgcatgtgtgggatACAaaaatgaggtagtcattcaaaaatcacgttcaacaccattattgcacacatgcaacttattatgtgacttgttaagcacatgtttactcctgaacttattttggcATGTctcaacaaaggggttgaatacttattgactcaagacattaaagcttttatttaaaaaatatttgaaaaacataattccactttgacattatggggtattgtgtgtaagccagtgccaaaaaaacgatttaatccatgttcaattcaggctgtaacacaacaaaatgtggcaaaagtccaGTGGTGTGTATACTTTTTGAAGGCATGTAAAATGCAATGAAGAATTTACCTAAGTTGATTCCTAGCTCTCGTCTAGATGGTTGTAGTTCTGATTTGGGACTCAATTGCGATCAAATCATGTGATATTTATACAATGAACACCTTccttatattgagttgcacaccttTTGGCacacagaacagcctcaattcgtcagggcatggactctacaaggtgttgaaagtgttccacagggatattggcccatgttgactccaatgcttcccacatttgtgttaagttggctggatgtcctttgggtggcataccattcatgatacacacgggaaacttttGAGCGTGAATAACCCAtcagcgctgcagttcttgacacactaatACCGGTGCgccttggcacctactaccataccccgttcgaatgggcacttaaatattttgttttgcccattcaccctctcccACAATCCATGTTtccattgtctcaaggcttaaaaatccttctttaacctgtctaatcgccttcatctacactgattgaagtggatttaacaggtgacatcaatatggGATCATAGCTTCCTTTTCATTGTAAAGTGAAACTGTTGAACACCTATCCTCTTTAGTGAGTGGTCAGGTACAGTGAGGCTTGAGAGAAAATGTTgaagttttaaagctaatttcctgcaattctgtaCCTTTTggcatgaggctgagagaaatgtttgcagttgtaaagctaatttcctgcaattctacacattttgctatcaTATGCTATCTGGGGGTATGTCttttcatttttgtatttttaaaatgtatgctgATGACCTCTTGGGGTCCACTAAGGTCCCAAAGTATCCAATGCTGACCTCTAGTTATAAGAGCATCAGAACTTTCACAAGCATCATGTGGGTCCCATATCAGAACATCCTCATTCTGAGAAGAATTGTTACTATTGAAAATCAGGAAATTAAAGATGTGGTGCTTTTTACAGTGCAACATAATGTAATTTCAAATAATATTTGTTATGCTTAATAAATGGGATccggagtggcgcagcggtctaaggcattgcatctcagtgctaaaggcgtcTCTACAGACCCTTTttcgattctaggctgtatcacaaccggccgtgattgggagtcccatagtgcggcgcacaatcggcccagcgtcgtccgggttaggacttgcctagttaaataaaggttcaataaaatatatGGTGTGTTACGGCTATAACATGATTCAAGTACATTTTGAACATTTGAATGCATGTTGAGTCTAAGCATACAGGCAGACAATGCACATGTGCATGTGAGGTGAGTGAGCCTGTGATAATTAGCAGAATCCTCCTCCACACAACAACATACTGCCTTCCTAATCCACTGACTCTGCTTCCATTTGACCGTTTTACAGAAAGCCCTCCAAACTTTCTATATTCATCCATAAAAACATAGATTTTATTCACCCATATATTATTTTTTTCCCACAAACATGAGCGTGCACAAATTATAGACATATAATGAATCCAAAGATATGAACATAACGCATAAAATATTCGATTAATTTCTCTGCTAATTCAACACATACTCTTTTCTTACACGTCATGATAAATTCAATGAAAGCACAATTCACATTCAACATATAGGTAGACTACAGAAGACAGATGGTTTCATATAAACATTTAGAGCCACTGGTTTGCACTGCAATAATTCACTTAATCCATAATGACACTTGAAACACCAAAAACCAAGTACAGTTGAAAACTAATCGAAATGTTTTGATTAACCAACTACATTTATCCTATAGCTCCATCCCACGTGTGTGCCCCGAGCGTGTTTTATCTTTAAATCGACTGAGATTATTATCTAATTCTTTAGCAGCTAGAAACCAAAAATAAAACGCTAATAAACTCATTCTCAATGCAGATTCAACACATCCACACATAAGTGAGGCCTATGCACAGCTCATTTTCACAAGGGCTGTGCTAACCTTGCCTGATCGAACCTTGCATGATATTCACTGTTTCAGAGATGATCCATTCTCCAAGGACACTACATTACCCCCTTCCTAGTTAACACAAAATTTCAGCACTGAATACTCTACACTATGATTATAAATTTGATTATTGCACATTGTCATCAAGAAGGCAAAACAAAAAAACGAAGTAAAACAATTACACAGTATCCCTTATGCGCTGTCAATCAGTCTGTCATTACGCGCCTATGATTGATGAGAGTATGACCAAATGTAAGGTATGGGCTACAGAGGTAGAACGTTCTTATTCTTCGACTCCATATTTGAATGCCTCGATGAGCCCTTCTACTGAGTGAATACAACCAGAAATGCTGCATATCCCCCCTATGACAAATATGGCGACGTCAAAGAACACGTGGTGCCATAAAAGTTTCCTCCACATCAGCTTTAGATGAAAGAGAGCTGGGAGAAGGAAGCACAATCCGGCGCCGGTAAGACTCCCGGTGAGGCCCATGAGGAGTGCGAAGTGAGGGACAAAGATGGCCATGACCAACGTGAACACCACCAGGAGGCACCGGAGACCCAGTCCCCAGGACTTAATCCTTCCTCCCGGGCCATAACAATCAGGGAATATGGCGCGCCCTCCATCCTGGAAAAAAGACTTCTCCAAGACCTCTACAGCAGCGAAGAATGGCAGCGGATATGACAGCAAGGCCTTAGCCACAAGGAATAGGTTGACCACCGCTCTGATGGTGGACGGCAGGTTGTCCGTGATGACCTCTTTGGTGGCATCTGCCCAAGTCAAGTAGGCCACCAGAGCGAACAGGCCCTTCAGGACGCAGGCTCCAATGTGGGTCCAGTCCATCATGCAGTGGAACTCGCTTGGCCTCTGCATGTTCCCCTCCAGCGAGGGCAGGAAGATCTGGGACGTGTAGCTGAAGACGATGATGCCAATAGAGATGGGGAACTTCTTGACATCAATATAGAATTTGACTTTGTCCCAGGCCCAATCGCGGGCTCTGGAGAGGCAGTAGGCTATTACCAGGATGTTGATGACGAAGTGCGCGATAGTGCAAAGCAAGCTGAACTTGGACACAGTCTTGAGGCTCTTGAGGAACGCGCAAGGCAAGAGGGCGGCCGTGGCGACTACAGACCAGGCCTTCTGCGAGACCGGCAGATTGGGGAAGCTGTTGACCATCAGGTTGCCACTGACCACCACGTACAGGATACAGGTCATGACCAACTCAATGATCTGAGCAACGTTAACGATATGCCCGCCCAGAGACGGGAACCGTGGCTGGCAGCACGCGTTGGCGATGTCCACGTAGGAGTCCCTCACGCGCACCAGAATTCCATCCTCGTTCTCCTCATACAGACACGCAATAAGAATCTTTCCGGTGTAACAACATACAACAGCCGCAAATATGATTAGAAAGAGTCCGAGGTATCCTCCGTGAAGAATGGCGT

Function

NR:

description
vesicular inhibitory amino acid transporter-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU913974 True 5028 TUCP 0.41 2 39944080 39949140

Neighbor

gene id symbol gene type direction distance location
actr5 actr5 coding downstream 11370 39919618 ~ 39932710 (-)
LOC110532049 LOC106571957 coding downstream 41417 39899065 ~ 39902663 (-)
LOC118966201 NA coding downstream 84888 39859077 ~ 39859192 (-)
LOC118966202 NA coding downstream 86557 39857408 ~ 39857523 (-)
LOC110532047 LOC106571956 coding downstream 95781 39835083 ~ 39848299 (-)
LOC110532053 LOC106571960 coding upstream 3272 39952412 ~ 39959954 (-)
LOC110531168 LOC106571968 coding upstream 13431 39961467 ~ 39996984 (-)
LOC110532056 LOC106571963 coding upstream 101876 40051016 ~ 40055551 (-)
LOC118966046 NA coding upstream 186312 40135452 ~ 40152692 (-)
LOC110531170 LOC106571977 coding upstream 234830 40183970 ~ 40204192 (-)
G803108 NA non-coding downstream 153795 39789152 ~ 39790285 (-)
G803107 NA non-coding downstream 155123 39788729 ~ 39788957 (-)
G803095 NA non-coding downstream 178019 39763362 ~ 39766061 (-)
G803094 NA non-coding downstream 178475 39762669 ~ 39765605 (-)
G803186 NA non-coding upstream 1663 39950803 ~ 39951014 (-)
G803207 NA non-coding upstream 47371 39996511 ~ 39996916 (-)
G803214 NA non-coding upstream 55958 40005098 ~ 40005442 (-)
G803216 NA non-coding upstream 58512 40007652 ~ 40008019 (-)
G803218 NA non-coding upstream 60235 40009375 ~ 40009581 (-)
G802609 NA other downstream 529754 39411342 ~ 39414326 (-)
G802602 LOC106571943 other downstream 560870 39380750 ~ 39383210 (-)
G802149 LOC106581475 other downstream 869360 39074481 ~ 39074720 (-)
G802138 NA other downstream 882699 39050530 ~ 39061381 (-)
G802100 NA other downstream 948048 38966456 ~ 38996032 (-)
selenok selenok other upstream 446592 40395732 ~ 40450018 (-)
G804137 LOC106572278 other upstream 621874 40571014 ~ 40573950 (-)
G804307 NA other upstream 913449 40862589 ~ 40912358 (-)
wdr6 wdr6 other upstream 956232 40904738 ~ 40916073 (-)

Expression


Co-expression Network