XLOC_027119 (zgc:55888)


Basic Information

Item Value
gene id XLOC_027119
gene name zgc:55888
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9467049 ~ 9476418 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053445
TTGAGCCTCACAGGTGATAATTGGTTTAATATTCGCGTTGTGTATCGTCGATTCTTGATGTTTCTCGGTTCATTTTTATCAACTAATATTCATGAACATGtgtaaaaagtgtttatttattttaattctcaCTCTTAAGTGGACTAAAGCTGACTCTGATGCCTCCTCATTTGAGACAGACTGCATTTTAGATAAGGGATGTGACGTTCTGGCAGGCATTCGTTCATTCGTCCCAGAAGATGAAGTGGAGGAGAGCCGGATTATTGGTGGAAAGGAGGCCTGGGCACATTCGTGGCCATGGCAGGTTTCTCTGCAGTACAATGATGTGCCAACCTGTGGTGGGGCCATCCTCGACCAGCTTTGGGTTATTACCGCCGGTCACTGCTTCAAACGTTATAAAAAGCCATCTATGTGGAACGCAGTGGTTGGATTGCACAATTTGGATAATGCGAATGAATCCTCACGGGAAtCCATACAGGTgcaaaaaatcttctctcacaAGAACTACAACCAGAAGACAAACGAGAATGATATTGCCCTGCTGAAACTGCAGAGTCCGCTGGTGTTCAGTAAATTTGTGAGGCCTATTGGCGTTTTTAACAATGACTTGCCTCCTCTGGTAACCTGCACTGTCACTGGCTGGGGCTCCGTCACAGAGAATGGTCCTCAAGCCTCCAGACTTCAGGAGGTCAATGTAACGGTCTATGAGCCACAAAAGTGTAACAGATTTTACAGAGGGAAGGTGTTGAAGTCTATGATATGCGCTGGAGCGAATGAAGGTGGAATGGATGCATGTCAGGGTGACTCTGGCGGTCCCCTCTCGTGTTTCGATGGTGAGAGGTACAAGCTTGCTGGAGTGGTCAGTTGGGGGGTCGGATGTGGTCGAGCTCAAAAACCAGGGGTCTACACCACCCTATACCACTACAGACAGTGGATGGTGTCGTCCATGCGTGgtgaACTTGCTGTTGAAGCTGATTCAGATGCTCAGTGTGGTCAGGCCAAGATGGAGCCCTGTCGACTGCCTGATGGTTTGGCACAGGTAGTGTCCACTGAGAATGGTGCATTCAAGGTGGAAAATGTGAGCGAGGCATGTCCGAATGCCTGGCCGTGGCAGGCTAGTCTGCAGAACGATGACACACATTATTGTAGTGGTGTCCTCGTTCATCCACGCTGGGTTCTGGCACCACGCCACTGTCTTGTCAAGGCAGGAGATGTGGTGGTCTTGGGAGCTCATGACCTGAACTTCATGTCTGGTCAGACTGTAGATGTGGAAAGCGTTCAGAGTTTGTCTCACAATGGCAGGAACCGGACAGTGTCTGATCTCTCCATGATCTACTTAACTGTTCCAGCTCGCATAGGGCCATTGATATTTCCAGTGTGCATAACTGATAAAGATGATGAACTGGTTAATGGAGACTCCTCATCTTGTGTGACAACTGGTTGGGGGCCAAGAAAAGCTACATTGGATTTGCAGCCTGAGATTCTACATATGGCTAGAGTTAAGCCTCTTTCTGAAGACACCTGCAGGACTGGCTGGGGTGACGGTTTCAACAGGCAGTCCCACCTGTGTACGCATGCAGCAGCCTCAACCTCCTGCTTGGGGGACTCGGGTGCACCCCTTGTGTGTGCAAAAAACGGGATTTACCACCTTGTAGGATTAACAACATGGGGCAGCAAGAAATGCCAACCTCAGAAGCCAGCTGTGTTCACTCGAGTATCTGCCTATCACTCATGGatacaaaattatattaaaactgCTTAATGTGTTCAATAAAGGTCATTTAAATTTAGTGTATTTGGTTCAGTGAGTAGGTTTCTGTAACGCATGGCGGCATCTACCAGTGGTATACCACCATAGACTCTGTGAGGAGTAGCATGTCTTCATTTACTTGTATAATAAACATACTAATAATATCCTGTGAGGCCATGGGAGAGGATTTGAGTGTCAGTGCAGTATCCGCAGGGccttaaagttttaaattcacaaaaaaatgttgttaaataaTTGTAAGTCTTAATTTCCGTATGTCCAGTTATCCAATCGGGCAAACATGCATCCAATCACCAACGATCAtcacaataaaacttttaacaaaactcAATACGATAACTATGTATTGCCAATATGGATTAGTTGTTATTGTCCTTtcaatattatttgtttaaacgTTCTTTGTGTATTTATAGTTCATATGTGATGTGGACAGTGACCTTGACAGATTGGTGTGCATACATtcagttttataataattaaagatttaatctttcatttttttgtatGCATCCAGCT
>TCONS_00053446
CCACCCTATACCACTACAGACAGTGGATGGTGTCGTCCATGCGTGgtgaACTTGCTGTTGAAGCTGATTCAGATGGTAAATCATTTTTTCCCCAAACAGTCGTGTACCTTTGCAATTGCTTTAGTCTTCGTTCATGTTCATTTCCATGTTCAGCTCAGTGTGGTCAGGCCAAGATGGAGCCCTGTCGACTGCCTGATGGTTTGGCACAGGTAGTGTCCACTGAGAATGGTGCATTCAAGGTGGAAAATGTGAGCGAGGCATGTCCGAATGCCTGGCCGTGGCAGGCTAGTCTGCAGAACGATGACACACATTATTGTAGTGGTGTCCTCGTTCATCCACGCTGGGTTCTGGCACCACGCCACTGTCTTGTCAAGTAAGCAAATTACATCTGATCAATTTTGCATTCATTGTTACTAGGTTCCTTGTGTTATGCTTATTGATGCCTGGTCAGATGAGACACGCATTACTGTTCCCTATATTTTATTCAAACTCTTTTCCCCTCTTATATTCACATGTTCTGCATTACCTTTGCCTAAATGTAAAGGTAAAAGCAgtgaaacaattaaaaaaacagtatCTTTATCATCAATATTAAACAGCGTTTCTCAAACTTGGTCCTCGCTCCTTACAGATCTGCATATTGTACATGTCTCTCTTATTTAACACAGCAGAATTAGATGACTATCCTGTTAGAAGAGCTCCATCTGACTTCCATGTACAGTGTTGAAGATGTGTTTTGGAGGGTAAACCTTTCGATGTGATTTAGGATGTTCAATCTTTTAAATCTGCGGTGTTTGAATCTTTTCCTGGAGGCTcgttgtcctgcagagtttagctctagACTCACTGGAAACCTCTGAGAACATATGTTGGAGCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000016538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053445 False 2290 mRNA 0.45 13 9467049 9476418
TCONS_00053446 True 879 lncRNA 0.43 2 9472002 9472944

Neighbor

gene id symbol gene type direction distance location
XLOC_027118 tmtc1 coding upstream 801 9394426 ~ 9466248 (+)
XLOC_027117 ipo8 coding upstream 77690 9360532 ~ 9389359 (+)
XLOC_027116 NA coding upstream 114417 9346919 ~ 9352632 (+)
XLOC_027115 NA coding upstream 120346 9340827 ~ 9346703 (+)
XLOC_027114 srgap1b coding upstream 132014 9279515 ~ 9335035 (+)
XLOC_027120 lmf2b coding downstream 2082 9478500 ~ 9502846 (+)
XLOC_027121 kitlgb coding downstream 32087 9508505 ~ 9515398 (+)
XLOC_027122 lsm8 coding downstream 60442 9536860 ~ 9539424 (+)
XLOC_027123 hspa14 coding downstream 116068 9592486 ~ 9601691 (+)
XLOC_027124 meig1 coding downstream 133487 9609905 ~ 9611875 (+)
XLOC_027113 NA non-coding upstream 263981 9197350 ~ 9203068 (+)
XLOC_027111 NA non-coding upstream 318095 9107259 ~ 9148954 (+)
XLOC_027107 NA non-coding upstream 581326 8874565 ~ 8885723 (+)
XLOC_027126 NA non-coding downstream 146873 9623291 ~ 9634704 (+)
XLOC_027129 NA non-coding downstream 250377 9726795 ~ 9730672 (+)
XLOC_027131 NA non-coding downstream 391492 9867910 ~ 9889097 (+)
XLOC_027135 NA non-coding downstream 581683 10058101 ~ 10061448 (+)
XLOC_027141 NA non-coding downstream 1238327 10714745 ~ 10715592 (+)

Expression


Co-expression Network