XLOC_002712 (sfrp1b)


Basic Information

Item Value
gene id XLOC_002712
gene name sfrp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20351413 ~ 20357013 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005035
ACTCTCGCGACGCGCACCGAAAAGCAGCGCGCGCCCAACACTCTTATCAAAACTGAAGAGACCGAGGACGAGTGCGCGCGGTAGCGTACTAATGCAAACAGAGCTCTTAACACAGCGACGCATGTGGATATAACTGTTCGGTACAGTATTTTCGTCCTTGTGCCATGAAGAACCTTGCCCTGAAGCTGTGGCTCTCCATCGCTCCGTTTCTTTGTCTGCCGCTGCTCAATGCCTTGGAGGATGAGGACTACATCTGGCCACCGGACAGTTCCGACAAACACCCGCCGTGTGTGGACATTCCCGAGGACCTGAGGCTGTGTTTTAACGTTGGCTACGGGAGGATGATGCTCCCCAATCTACTGGACCATGAGACCATCGCGGAGGTGAAGCAGCAGGCGGTCAGCTGGGTTCCGCTGGTGCACAAAGCCTGTCACAAGGGCACACAGGTCCTGCTCTGCTCGCTCTTCGCCCCAGTGTGCCTCGACAGACCCCTATACCCGTGCCGCTGGTTCTGCGAGGCTGTCCGGGACAGTTGTGCCCCCATCATGCAGGCGTTTGGCTTTCCCTGGCCAGAAATGCTCAGATGTGATAAGTTTCCTTTGGGCGAGGTTTGCATTTCATCGAACGCCACCAAGAGTAATGAAACAGACTTAATCGCAGgTGGCTCATCTGTTTGTCCAGCATGTGAAAATGAGATGAAAACAGATTTGATTCTGGATCAGATGTGTGCCAGTGAATTTGcaATCAAGACGAAGATCAAAGAGGTTAAAATAGACAACTTGGACCGAAAAGTCATTCTGCAGAAAAGGAGAAAACTGGTGAGGGCTGGAAGTATGAAAAAGCAGGATCTGAAGAAGCTTGTGCTTTACCTGAAAAGTGGAGCACATTGTCCATGCCAACAGCTGGAAAACTTAGAGAACCACTATCTAATCATGGGTCGAAGTGTGGGGAAACAGTATGTTTTGACAGGCATTCACAAGTGGGACAATTCTAGCAAAGATTTTAAGAAAACCATTAAAAAACTCAAAAACCATAAATGTCCGTCTTATGATCAcgtgtttaaataataatcacTTGGAAACTAATCTTACAAACATAACATGATATTACTTTTTGTGTTACATGCCACAATCTAGTTTCAAAAGAGCTTGTTTGACAAACAAATGGTGAAAAAAGTGCAGACGAGTCTTATTTAGTTCAATCTCAAGATGTTTTTCTAATCAATCATCATTATGAGTTCTGCTTTCACCTTTTGATTTATCTTGTTGGATTAATATCTATCGGTGCAatctgtttaaaatgtttatgttGTAATATTCATCACAGCTGTCAGTTATTCTTCTATTCAGTACAATACATACTGCACAATACCTTAGATAATAAAGTGACAACCTTAACAGTACATTTTGTCTCGCATAGGATGCAAATCACAATTATTCTCGCAGTGAAATGTGTCCTATAGCATGCCTGTGGACTTGCACAATGCACTGTAATCAGTCAACATTAAAacagaatgtatttttaata

Function

symbol description
sfrp1b Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including endoderm; pronephric duct; tail bud; yolk; and yolk syncytial layer. Orthologous to human SFRP1 (secreted frizzled related protein 1).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-1 Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including endoderm; pronephric duct; tail bud; yolk; and yolk syncytial layer. Orthologous to human SFRP1 (secreted frizzled related protein 1).

Ensembl:

ensembl_id ENSDARG00000057678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005035 True 1527 mRNA 0.44 3 20351413 20357013

Neighbor

gene id symbol gene type direction distance location
XLOC_002711 zmat4b coding downstream 12275 20270831 ~ 20339138 (-)
XLOC_002710 NA coding downstream 114442 20234014 ~ 20236971 (-)
XLOC_002709 htr7b coding downstream 176295 20158838 ~ 20175118 (-)
XLOC_002708 CR450836.1 coding downstream 200085 20143797 ~ 20151328 (-)
XLOC_002707 pbdc1 coding downstream 245401 20103067 ~ 20106012 (-)
XLOC_002713 loxl2a coding upstream 50875 20407888 ~ 20445549 (-)
XLOC_002714 NA coding upstream 91626 20448639 ~ 20456007 (-)
XLOC_002715 tacc1 coding upstream 103538 20460551 ~ 20481763 (-)
XLOC_002716 BX294119.1 coding upstream 126801 20483814 ~ 20483930 (-)
XLOC_002717 ddhd2 coding upstream 146873 20503886 ~ 20524592 (-)
XLOC_002705 NA non-coding downstream 354682 19931298 ~ 19996731 (-)
XLOC_002703 NA non-coding downstream 829709 19518885 ~ 19521704 (-)
XLOC_002701 NA non-coding downstream 1258807 19088996 ~ 19092606 (-)
XLOC_002720 NA non-coding upstream 259763 20616776 ~ 20618813 (-)
XLOC_002724 NA non-coding upstream 485905 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 non-coding upstream 551429 20908442 ~ 20908556 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08727439_08731885 NA coding CI01000304 null 8727316 ~ 8732117 (-)