G803026 (LOC106566687)


Basic Information

Item Value
gene id G803026
gene name LOC106566687
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40184041 ~ 40189878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU913799
ACCCATGTCCACACACTCACGCGGGGTGTGTCCAATgtggattttttgggggggggacaaaaattaCTCAAAAAAACATTCACTGCTTACTTAGACGACAGCAGTACTCATTACTTTCTCTGGGGTGGAGTGGGGGTACTGAACTTAAAAGGGGTCAAGGTTCAAAACCACATTGACAGTTATTATTATTTGATTCATACTTCTTATtctcagagagggagagcgggtgTGGCCAGAAGTGCTTCCCTGTTGAGGTTTCCATGACAATGGTGCCGTGGCAGCGGTAGTGGTCTACTTGGCGTTGGCGGAGCTGCTGAGCATCTTGCGGACGGCCTGCACGATGGCGTCGCGGTCGATGCCGAAGATCTTGAGGAGCTCAGTGGGTTTGCCGCTGCGGGGAACGTGGGCCACGGCCATACGGTGCACATTGAAGCCCGTCTCATTTACCACAGCTGAACACACGGCCTCTCCCAGGCCCCCTAAATAATTACATTTCTATGGTAGCCATTTTTATAACAACATTTGTCACAAAGTGTAAGACTAGGGAGCACTAGTGTGTTAAGTGCTAAGACTACATCTTACATCCTTCTCAAACTGAGTGGTCTGTCTTTGTGCAGTGAAACCCTGCTTTGCTGTACAGCATGTACAGTAGCTGGCCAGTCAGTCCAATCTATACATCGATTTTGTCTTCCAATCCACTGACCCTGTATCACTGACACCTCAACAGCCCACTGAGCAGCTCTGGCACCTGAGCCTCCCCGACAGGCCTTGCCACCACCCACTCATTGACTGACAATCAGGCCGGGGTGGCGAAGGGGGGCCGGGGGGTGAGAGAGGGCGTTCTACCACTTTACTGTAGTAGCCATCTG
>TU913800
ACCCATGTCCACACACTCACGCGGGGTGTGTCCAATgtggattttttgggggggggacaaaaattaCTCAAAAAAACATTCACTGCTTACTTAGACGACAGCAGTACTCATTACTTTCTCTGGGGTGGAGTGGGGGTACTGAACTTAAAAGGGGTCAAGGTTCAAAACCACATTGACAGTTATTATTATTTGATTCATACTTCTTATtctcagagagggagagcgggtgTGGCCAGAAGTGCTTCCCTGTTGAGGTTTCCATGACAATGGTGCCGTGGCAGCGGTAGTGGTCTACTTGGCGTTGGCGGAGCTGCTGAGCATCTTGCGGACGGCCTGCACGATGGCGTCGCGGTCGATGCCGAAGATCTTGAGGAGCTCAGTGGGTTTGCCGCTGCGGGGAACGTGGGCCACGGCCATACGGTGCACATTGAAGCCCGTCTCATTTACCACAGCTGAACACACGGCCTCTCCCAGGCCCCCCTCGTAGTAGTGGTCCTCCACTGTGATGATGCGTCCCCTGGTGGCCTTGGCGTGCTCGACGATGGTCTTGGAGTCCAGAGGCTTGATGGTGAAAGGGTCAATCACTCGAATGTTGATCCTCTCCTTCTTTAGCATTTCAGCAGCTGCCAGTGCCTCATGAAGGGTCACGCCCGCTCCGATCACCGTCACATGATCATCGCTGGTCTTGTACACAACCTTCGCCTGTCCCACATGAAAGTCCTCGTTGCTGTTGTAAAGAACAGTGTTCTCTGGGCGACTGGTTCTGATGAAACACACACCCTTCGTGTTGGCGGCCAGCTCCACAGCTTTCTCAGTGGACACGCCGTCGCTAGGGTAGAAAATGGTTGCCGTGGGAATGGCTCTGAACATGGCAATGTCTTCGAGGCCCATCTGAGAAGGACCATCCTctcctagaacacacacacacacgcacgtacacacacacacacgcgcgcgcgcgcgcaagTCAGACAGAACAACACTTGGCGTGTTTGGGGCTGCTGAAAGTGAAAGCTACAGGGCAGGCATGCGTTCAGTGGGGCGAGTCGGCGTGGGCATGCAATGTACCTGAGGAACCAAAAGGAAGCCTGGCCGCCCCGCCACCACCACTtccgtgacacagagagagagggggggagggagggaacgagtGCTGGCCGGTGCCACACTGATACATTAATAGATGGAAGGAAGATGTGAAGAAACAAAAGCAAAGTTCAGGATTCAGGAAATAATACAGGATTATACGACGCGAGGTCAACAACGAGGGAACGATTCAACCCACTGCAGGATTGTTACCAAAATGTTTGGTCGAAACCAACTGAAGCCAAAGGCCCTCTCCACCTAAACAGTTTTAGGGGAAGCACTGTGTGACAGTAAGCCAAGTCTTCTGCAGTGGGCTGAATCAGTCCCAGAGGAACAAGTGCTGAGAGCTACGTCAGGGTCACAGTGAGGAAGTCACAGGGGTCACTACACAGACAGTtcactaggggggggggggtcaaaggtCAGTGGGCGGACTGACCGATGGACACGCCGCAGTGGGAGCCACACAGGTTGATGTTGCTCTCGGAGATGGCGGCCATGCGAAGCTGGTCGTAGGCACGCGTGAAGAAGGTGGCGAAGGTGCTGGCGAACACCACGTTGCGGTCCCGCGTGGCACAGCCCACCGCAATGCTcacctgacagaggaggagagggaggaaagcggTGTTCATGATTACAAAGACCAGATAGAAGCCTGAGCAACTTGTGTTCTCACAGTCTGCCCAAAGTGCCTCAAGTCAATCTTTAGACACATAAGAAGGGAGCCAGCATCTTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU913799 False 869 lncRNA 0.51 2 40184041 40184930
TU913800 True 1823 lncRNA 0.54 5 40184041 40189878

Neighbor

gene id symbol gene type direction distance location
mybl2a NA coding upstream 19895 40152702 ~ 40164146 (+)
LOC110532064 LOC106571978 coding upstream 48454 40120481 ~ 40135587 (+)
LOC110532061 LOC106571980 coding upstream 74834 40098734 ~ 40109207 (+)
LOC110532062 sfrs6 coding upstream 85436 40094682 ~ 40098605 (+)
LOC110532058 LOC105026338 coding upstream 93393 40086011 ~ 40090648 (+)
LOC110531171 LOC106571974 coding downstream 33312 40223190 ~ 40328855 (+)
LOC110532067 LOC106571972 coding downstream 168907 40358785 ~ 40371338 (+)
LOC110532068 LOC106571971 coding downstream 185394 40375272 ~ 40393967 (+)
LOC110532069 NA coding downstream 217934 40407812 ~ 40410397 (+)
LOC110532072 LOC106572278 coding downstream 314774 40504652 ~ 40574256 (+)
G803017 NA non-coding upstream 11037 40170282 ~ 40173004 (+)
G802998 NA non-coding upstream 66213 40117589 ~ 40117828 (+)
G802997 NA non-coding upstream 67066 40116621 ~ 40116975 (+)
G802996 NA non-coding upstream 68503 40115039 ~ 40115538 (+)
G802981 NA non-coding upstream 112328 40071506 ~ 40071713 (+)
G803324 NA non-coding downstream 15032 40204910 ~ 40205256 (+)
G803325 LOC106581475 non-coding downstream 15525 40205403 ~ 40205624 (+)
G803393 NA non-coding downstream 158847 40348725 ~ 40348955 (+)
G803401 NA non-coding downstream 176969 40366847 ~ 40367047 (+)
G803402 NA non-coding downstream 178936 40368814 ~ 40369045 (+)
G802830 LOC106571955 other upstream 372016 39810327 ~ 39812025 (+)
G802822 NA other upstream 391708 39791917 ~ 39792333 (+)
G802821 NA other upstream 393639 39789657 ~ 39790402 (+)
spryd4 LOC106571951 other upstream 543172 39639241 ~ 39640889 (+)
adcy6a LOC106566714 other upstream 710484 39465931 ~ 39513879 (+)
G803437 selenok other downstream 253018 40442896 ~ 40449939 (+)
G803457 NA other downstream 277750 40467628 ~ 40468002 (+)
G803728 NA other downstream 831058 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 1245006 41423598 ~ 41452922 (+)

Expression


Co-expression Network