XLOC_027121 (kitlgb)


Basic Information

Item Value
gene id XLOC_027121
gene name kitlgb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9508505 ~ 9515398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053448
GTCGCGCTCTGAGCACGCCATGCTCTCCATCGGGACCGGAGGAGAAAAGACACGCCAAAACCACTGATTCCAATCCCGTCCTGTGATTATCTCCAGTCATTTACAGGCGGAAACATGCCTGCATTCCGCTGTCAGGGGTAGCGAAGAAAGTAGGGAGACACGgctgatttgtttttaatattcccATGTTCCACATGAGGGAGGTTAAGATTGGAGAAAGCATTTGTGTATTAGTGTTGCTTTTTTCGGGGCTTGTGACCTGCTCAGGTGTTTTTGGGAGCCCTTTAACAGATGATGTGGCCACGTTAGATACCCTGAGTGAGAATATTCCCAGTGACTACAGAATACCCATCAAGTTCATCACAAAGGATGTGGGTGGAGCTTGCTGGCTGCATTTGAACCTGTATCCAGTCGAgagcagtttaaaaaaattggCCATCAAGTTTGGCAACCAGTCCACCAATAAGGCCAACATCACCATTTTCATAACAATGCTGCAGGATTTTCGTTTCACTCTGAACAGTGACGACCTGGAGGACAGAATGCAAGCCTTCAAGTGCCACTACAGAAGGGAAAAGTGGCCGACTAGGCGCTTCTTTAGCTATGTTAAATCCGTTCTTACAGTGGCCGGCTCCACATATGGTGATATTCCTCCATGCACACCTCCTCCTTGCCAGACCCTCGCAGCTCCTCCTTTCACGCCAGgtcAAAGCAGACAGCAGAATGGCATGAACTCTGCGGTTCATGGGCTCCTGGCGCTGCTCATCATCCCCAGTGTGGCTATTCTAGTTCTCACTATCCAAATGGCATTAGGAAGAAGAGGTCGTTGTGGAGCAAGAATGCGTGAAGTTGAGCCTCACGACAGAGCTGAAGAAAACAGAAATGAGCTCCACAGCGGAGCTGCACAGGAGGACCCGGCTTCCACCTCCGCCAGTGAACAAGACAGGGCGTGGCTGGATTCTTTAGGGTGTGCAGACACAGaggtctaataaaaaaaaaaagcaaaaggaaaGTCGACGGAAACGCCAGTATGCTCCGGAGTTATGAAGGGAATATCCAGAACGGGATGCTTTTAAGCCATACCTGCTCACCATTAAACTTTGGGCCGAAGAGACCAATCGTAACACGCGACGAGCTTAACCAATCAATGAGGGTCTGTTATTCCGGGATGCCATCCGGAAAAACAGCACGGGAAAACCTTTATGATTTCATCCGGCAGGAAGTGCAGCTCTTTGATGAGCTTCTTGCAGCGCCCGCGGCAGCTTTGCTGGCTTTGAGGAAAAAGCCACTGGTCCTGCAAGCCTCTGCGCGAGAGGATAAATGGCTTTTTTGTGCCAGAGCTCGTCATTGCATGAGGACGGCGGTTTATGTTGCACCAGAAAACATCTTTGGAACAGAGCACGGGCTTGTCTGGAAACACGTTTGATTTAGAGCGTGATCAAGCGTGCCAAGATTTTGGGTGTTTTGCTAGTGTTTTATTTGAATATTCTGATGATGGAGGGGGAATCTGTTGTGAGTGTGTGGAAACGTGAGGTCCTGAGATCTCTTGCGTTCACACTTGTCAGTCCAAATCTGATTGGGATTTGATCAAAAGTAGTCTAATACTAAATTCCTGGAGAatcgcagctctgcatagtttagcttcaaccacctccaactcacgcCTGCTTAATATCCTCTAGTAGtcttgatcagctgtgtttgattagagttggagcaacaTTAAGCAGAgatgcggctctccaggaatccagtttgagagcTATGATCTAAATGGTTGACTGTCCACACTGTTGGGATCTGATTTGTGTGTGAAATGAAAAAATTAGAAGAAATCCGAGAGCT

Function

symbol description
kitlgb Predicted to enable cytokine activity and stem cell factor receptor binding activity. Acts upstream of or within embryonic hemopoiesis and hematopoietic stem cell homeostasis. Predicted to be located in several cellular components, including extracellular region; filopodium; and lamellipodium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including caudal vein plexus; central nervous system; gonad; kidney; and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 69 and familial progressive hyperpigmentation with or without hypopigmentation. Orthologous to human KITLG (KIT ligand).

GO:

id name namespace
GO:0061484 hematopoietic stem cell homeostasis biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005173 stem cell factor receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-2 Predicted to enable cytokine activity and stem cell factor receptor binding activity. Acts upstream of or within embryonic hemopoiesis and hematopoietic stem cell homeostasis. Predicted to be located in several cellular components, including extracellular region; filopodium; and lamellipodium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including caudal vein plexus; central nervous system; gonad; kidney; and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 69 and familial progressive hyperpigmentation with or without hypopigmentation. Orthologous to human KITLG (KIT ligand).

Ensembl:

ensembl_id ENSDARG00000058042

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053448 True 1845 mRNA 0.48 8 9508505 9515398

Neighbor

gene id symbol gene type direction distance location
XLOC_027120 lmf2b coding upstream 5659 9478500 ~ 9502846 (+)
XLOC_027119 zgc:55888 coding upstream 32087 9467049 ~ 9476418 (+)
XLOC_027118 tmtc1 coding upstream 42257 9394426 ~ 9466248 (+)
XLOC_027117 ipo8 coding upstream 119146 9360532 ~ 9389359 (+)
XLOC_027116 NA coding upstream 155873 9346919 ~ 9352632 (+)
XLOC_027122 lsm8 coding downstream 21462 9536860 ~ 9539424 (+)
XLOC_027123 hspa14 coding downstream 77088 9592486 ~ 9601691 (+)
XLOC_027124 meig1 coding downstream 94507 9609905 ~ 9611875 (+)
XLOC_027125 tmem243b coding downstream 97176 9612574 ~ 9619557 (+)
XLOC_027126 NA coding downstream 107893 9623291 ~ 9634704 (+)
XLOC_027115 NA non-coding upstream 161802 9340827 ~ 9346703 (+)
XLOC_027113 NA non-coding upstream 305437 9197350 ~ 9203068 (+)
XLOC_027111 NA non-coding upstream 359551 9107259 ~ 9148954 (+)
XLOC_027107 NA non-coding upstream 622782 8874565 ~ 8885723 (+)
XLOC_027129 NA non-coding downstream 211397 9726795 ~ 9730672 (+)
XLOC_027131 NA non-coding downstream 352512 9867910 ~ 9889097 (+)
XLOC_027135 NA non-coding downstream 542703 10058101 ~ 10061448 (+)
XLOC_027141 NA non-coding downstream 1199347 10714745 ~ 10715592 (+)

Expression


Co-expression Network