G803437 (selenok)


Basic Information

Item Value
gene id G803437
gene name selenok
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40442896 ~ 40449939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU914281
AGCACAGGACTTTATTTAACAGTGGGATACAAAAAATATTACAGCTTCGGAGAGGGATGTGATATGATTCACAAGGGGACAAGAAGAGGAGGGGTCAGAAAAAGGAAGCTGCCGTATCGGCCGCCCTGGACCCTACGTGTAGGAATTCCCAGAGGAGCGTCAGGAGTCTGTGGTGAGCAGAGGCAGCTGTAGAGGATGGGGGGCTGGCACACATGCACGTCATTGCAGCCTAAATTAGGCTACATGTCTGCAGCCGGTGTGCCACAACCCACGCCTACACAAAAATGTGTAGGCGTTTACcttcctcatcctcctccccccATGGGAGGGGCGCTGGGCCCCCCACCGTGGTTTATCCTCCCCATCCGCCTCCGGCCACCAGGGGGTCCAGGGGGGCCTCTGCCATCACTGTAGCCTGCAGAGGACGAGCCAGAGTTACCCCTCTTTGTCAGATCTGGCTGGACCAGGGATtggaaaAACAAGCCAATGAACTCCACAGCACCCCAGAAGAGATCAGTGAGGAACGACATTCGCCATGGAGACTGGCTTCTGTTGTCCAGGACCTGACCATTCGCCACGTACACCATTTTTGCAGCTCCCAACTACTGTTGTTCGCTGCTAAATTTCC

Function

symbol description
selenok Predicted to be involved in calcium ion transport; endoplasmic reticulum calcium ion homeostasis; and protein palmitoylation. Predicted to act upstream of or within ion transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K).

NR:

description
selenoprotein K

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU914281 True 628 TUCP 0.55 5 40442896 40449939

Neighbor

gene id symbol gene type direction distance location
LOC110532069 NA coding upstream 32499 40407812 ~ 40410397 (+)
LOC110532068 LOC106571971 coding upstream 48929 40375272 ~ 40393967 (+)
LOC110532067 LOC106571972 coding upstream 71558 40358785 ~ 40371338 (+)
LOC110531171 LOC106571974 coding upstream 114041 40223190 ~ 40328855 (+)
mybl2a NA coding upstream 278750 40152702 ~ 40164146 (+)
LOC110532072 LOC106572278 coding downstream 54713 40504652 ~ 40574256 (+)
LOC110532075 NA coding downstream 316343 40766282 ~ 40768598 (+)
LOC110532080 LOC106572270 coding downstream 466171 40916110 ~ 40918983 (+)
si:dkey-72l14.3 LOC106572263 coding downstream 631513 41081452 ~ 41087171 (+)
LOC110531178 LOC106572259 coding downstream 802727 41252666 ~ 41363977 (+)
G803402 NA non-coding upstream 73851 40368814 ~ 40369045 (+)
G803401 NA non-coding upstream 75849 40366847 ~ 40367047 (+)
G803393 NA non-coding upstream 93941 40348725 ~ 40348955 (+)
G803325 LOC106581475 non-coding upstream 237272 40205403 ~ 40205624 (+)
G803475 NA non-coding downstream 59211 40509150 ~ 40544148 (+)
G803503 NA non-coding downstream 131045 40580984 ~ 40581239 (+)
G803508 NA non-coding downstream 142603 40592542 ~ 40593479 (+)
G803542 NA non-coding downstream 217343 40667282 ~ 40668064 (+)
G803563 NA non-coding downstream 267413 40717352 ~ 40717606 (+)
G802830 LOC106571955 other upstream 630871 39810327 ~ 39812025 (+)
G802822 NA other upstream 650563 39791917 ~ 39792333 (+)
G802821 NA other upstream 652494 39789657 ~ 39790402 (+)
spryd4 LOC106571951 other upstream 802027 39639241 ~ 39640889 (+)
G803457 NA other downstream 17689 40467628 ~ 40468002 (+)
G803728 NA other downstream 570997 41020936 ~ 41021502 (+)
LOC110532096 LOC106572259 other downstream 984945 41423598 ~ 41452922 (+)
LOC110532114 LOC106572334 other downstream 1571920 42021496 ~ 42027071 (+)
G805451 NA other downstream 1882154 42332093 ~ 42332438 (+)

Expression


Co-expression Network