G803589 (LOC106572271)


Basic Information

Item Value
gene id G803589
gene name LOC106572271
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40776641 ~ 40778842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU914452
GACAGGATCTGGAAATGTGCTGTCTTGCACAGTTCTGTCTTTTATAAAAGTGCTGGAAACAAAATGGTTGGCTCACCATTTACTAAAAAGTTATCAGATGGAGAAGTTATTTGGATGAGAAGGAGTTTTGGCGccggtacagccaactagcgctaGTTAACGTTAGGAACCATAGCTACGTAGCTAGctaaaatataatttaaaaaacattttgttgATTATGAATGACAAATATTCAGATTCGAATCACAATTGTTTGATTTTTTTCAAAAGGATCACTGTGCTCAACTCGTATTATTCTTCATATTAATATTACAATGATCAGTCATACCATCTTTGTTTTGCTCTTCATCATAATCTTCACTTCTCCAGTCTCCACAATGTAGAAACAATCtgccctgtccccCTGCATGATGATGCGTTCTCCATCGGAAAACGTCTTCATTCCTAATACATCCACAATCTTCATCCTCTCGGATAActccAGAGACTTCAGTAGAGGCACAGACTCCACAAATTGCTCGTACAGCCTCCTCTTCTTGGCATTGTTCTTCACAATGAGCCTACGGAACGTGGCCCGGTCCTGGCCCAGAGCGCCCCCTCCTGGGTGGCAATAATAGTGGCAGCGCGGGGGGTGTTGTACATCAGTGCCAACTCCCCGAAGCTGCCTTTGTTGTCATACTGCCCCACACACGTCCCTACGCCATCAATCAGTACCACTATGTCATAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU914452 True 731 lncRNA 0.43 5 40776641 40778842

Neighbor

gene id symbol gene type direction distance location
LOC110532075 NA coding upstream 8043 40766282 ~ 40768598 (+)
LOC110532072 LOC106572278 coding upstream 202385 40504652 ~ 40574256 (+)
LOC110532069 NA coding upstream 366244 40407812 ~ 40410397 (+)
LOC110532068 LOC106571971 coding upstream 382674 40375272 ~ 40393967 (+)
LOC110532067 LOC106571972 coding upstream 405303 40358785 ~ 40371338 (+)
LOC110532080 LOC106572270 coding downstream 137268 40916110 ~ 40918983 (+)
si:dkey-72l14.3 LOC106572263 coding downstream 302610 41081452 ~ 41087171 (+)
LOC110531178 LOC106572259 coding downstream 473824 41252666 ~ 41363977 (+)
LOC110532096 LOC106572259 coding downstream 644756 41423598 ~ 41452922 (+)
soga1 LOC106572256 coding downstream 719469 41498311 ~ 41573943 (+)
G803595 LOC106586415 non-coding upstream 4661 40771487 ~ 40771980 (+)
G803593 NA non-coding upstream 14352 40761981 ~ 40762289 (+)
G803592 NA non-coding upstream 15596 40760496 ~ 40761045 (+)
G803591 NA non-coding upstream 24821 40751355 ~ 40751820 (+)
G803583 NA non-coding upstream 31244 40745197 ~ 40745397 (+)
G803586 LOC106572271 non-coding downstream 37159 40816001 ~ 40817492 (+)
G803629 NA non-coding downstream 85958 40864800 ~ 40866855 (+)
G803603 NA non-coding downstream 107636 40886478 ~ 40888179 (+)
G803644 NA non-coding downstream 115713 40894555 ~ 40895734 (+)
G803457 NA other upstream 308639 40467628 ~ 40468002 (+)
G803437 selenok other upstream 326702 40442896 ~ 40449939 (+)
G802830 LOC106571955 other upstream 964616 39810327 ~ 39812025 (+)
G802822 NA other upstream 984308 39791917 ~ 39792333 (+)
G803728 NA other downstream 242094 41020936 ~ 41021502 (+)
LOC110532114 LOC106572334 other downstream 1243017 42021496 ~ 42027071 (+)
G805451 NA other downstream 1553251 42332093 ~ 42332438 (+)
G805600 NA other downstream 1567334 42346176 ~ 42348786 (+)

Expression


Co-expression Network