G803586 (LOC106572271)


Basic Information

Item Value
gene id G803586
gene name LOC106572271
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40816001 ~ 40817492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU914449
TCTATCACATCCGTTTCAAATGACCAACTAAGCATGATCGTATTCAGTCTGGGCCATATTAGGTGGAAGGCCTTATCAGGCAGTAACTTACGCTCGAAATCAGACTCGTCGGACCCGTCTTCGTCTCCATTTGACTCGGTTTGCATCGGCTCCCCATCAAACATCACTCCTTTCCCGAGCTTGACAGCAGCACCCGCCCCATCTTGGCTTCTGGTGTCCCGCAAGCGCGTGAAATATTGCACGGCGAATTCCACCAGGTCCGGTGGCCTCTGTCGAAGCACCTCCACCGTGTAGCCTTGCAGCAATTCCGTCAATCCCACCGGTATCTCGATACTCATGACTGTGTTTAGATGGCGCTACCTAACTACAAATATGTTCAGGTATACTGTGTTTTTcttacaaaaatataaatgtagctagctacgaATTCTATCAGTCCATGTGTAGCACGCTAGTTAGCTACTGTGAGATAGCTGACACTGGTAATAGCGTCAGAGAAACTGGGTTAGCTTGCTGACATTGATGAGCAGTTCACCGGAGAGGTTGCTTAGTTAAGCCAGCTAACACAATGTCCAAGCAAATAGTGACACTTCTTTTTGTCGAAGGGAGGTCGGTCTTGTGTAAAGAATGAAATATGACCAGTGACGTTAGCGTTAGTTTATGATATCTGACTGAGCTGTCAAGTTGGGTAAGTTAGCGTTAGCTAGATAGCTCGCTCGCTCGCTAGATGCTTTTATGACAGCTGACCCGTAAACGTTAGCACAAATGTTAACGACCGTTAGCTGGTTCCCTCGCTGGCCTCCCTGTTCTCTTTATTTCGCCTCCTCTTTTTCGCCCGTCTCCTTGCCAGGGTAGCGGCTCAACCCCTCCGGCTAATGGTATAACGGATCAATATCAACAGCACGGAATAATTgacctagctagatagctaactaatTATATCCAATCTGAGTTAAACTAGCTAATTTAGCATATAATTAATTATACTTTGGAGGGTGGGACTTGTGAATGTAAGTTAACTTTAGCTAACAGGTTTGTTCCGATTAAATAAACTAACTAGAACATATAATTAAATAGCCGAGGGCTGACTTAGTATTTATTATACGCATAAGTAACGGCGGTTATAGCTAATGGATCACGTTACTTTAGTTAGCTACCGGTAACTAAACTAGCCAACAAGCTGGCTAGCTAGAAGCGTCTGATGTTACGATTGCAGGCAGTTCAGACAATCCGAAACCGGTGTATCCCAAGCTCCTGTAAACAAGGAGCGTCAGGGACAACCTAGACGTTACCTTGAATCCAAATTACCCAGTGTTTCAAAAAAAATGTGTGGTATGTTGGTATCGTCACTTGTGATATTCGGTAAATCCGTTTCTGCCTACAGTTGAGGCtcttcttttttctttttcttgCTCCACCACACGAG

Function

NR:

description
cAMP-dependent protein kinase type II-alpha regulatory subunit-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU914449 True 1426 lncRNA 0.45 2 40816001 40817492

Neighbor

gene id symbol gene type direction distance location
LOC110532075 NA coding upstream 47403 40766282 ~ 40768598 (+)
LOC110532072 LOC106572278 coding upstream 241745 40504652 ~ 40574256 (+)
LOC110532069 NA coding upstream 405604 40407812 ~ 40410397 (+)
LOC110532068 LOC106571971 coding upstream 422034 40375272 ~ 40393967 (+)
LOC110532067 LOC106571972 coding upstream 444663 40358785 ~ 40371338 (+)
LOC110532080 LOC106572270 coding downstream 98618 40916110 ~ 40918983 (+)
si:dkey-72l14.3 LOC106572263 coding downstream 263960 41081452 ~ 41087171 (+)
LOC110531178 LOC106572259 coding downstream 435174 41252666 ~ 41363977 (+)
LOC110532096 LOC106572259 coding downstream 606106 41423598 ~ 41452922 (+)
soga1 LOC106572256 coding downstream 680819 41498311 ~ 41573943 (+)
G803589 LOC106572271 non-coding upstream 37159 40776641 ~ 40778842 (+)
G803595 LOC106586415 non-coding upstream 44021 40771487 ~ 40771980 (+)
G803593 NA non-coding upstream 53712 40761981 ~ 40762289 (+)
G803592 NA non-coding upstream 54956 40760496 ~ 40761045 (+)
G803591 NA non-coding upstream 64181 40751355 ~ 40751820 (+)
G803629 NA non-coding downstream 47308 40864800 ~ 40866855 (+)
G803603 NA non-coding downstream 68986 40886478 ~ 40888179 (+)
G803644 NA non-coding downstream 77063 40894555 ~ 40895734 (+)
G803677 NA non-coding downstream 132863 40950355 ~ 40950576 (+)
G803457 NA other upstream 347999 40467628 ~ 40468002 (+)
G803437 selenok other upstream 366062 40442896 ~ 40449939 (+)
G802830 LOC106571955 other upstream 1003976 39810327 ~ 39812025 (+)
G802822 NA other upstream 1023668 39791917 ~ 39792333 (+)
G803728 NA other downstream 203444 41020936 ~ 41021502 (+)
LOC110532114 LOC106572334 other downstream 1204367 42021496 ~ 42027071 (+)
G805451 NA other downstream 1514601 42332093 ~ 42332438 (+)
G805600 NA other downstream 1528684 42346176 ~ 42348786 (+)

Expression


Co-expression Network