XLOC_027125 (tmem243b)


Basic Information

Item Value
gene id XLOC_027125
gene name tmem243b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9612574 ~ 9619557 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053454
ataaacaatacacACCAGCTGTCCCTTTAAGATAACGTCACTTCCGGTTTCATGCACCGAGCCGTCATTACTGCTGCTCTTTTGAAGTCATGCGGATAATACGCTGATCGGAATATCAATAAATCCCCCCGCTTGCTTCATCAAGGTAGCCAACCATGAGTGTGATGTGCTTGTAAATCGCTTGCTGTGAGGAGAGAAGCGCGATCATGCACCGCCATCCTCCACGCCAGAAGAGCTGCAGCTGCTAGAAGGACTCAGGGAAGTGTGTATGTGTCGCTCTGGCCATGGATGACTTCACTACACGCACCTATGGCACCAGTGGCATGGACAACAGGCCTCTGTTCGGAGAGACCTCGGCCAGGGATAGAATCATCAATCTAGTAGTCGGTGGACTTGCATCTTTACTTGTTCTGGTGACCATCATTAGCTCATTCGTCTTTCCTTCACTGCCTCCCAAACCACTCAATATATTCTTTGCCATCTGCATCATGCTAGTCTGCGGCTCAGTGTTGGTTCTGATATACTGGTATAGGCAGGGAGATCTGGAGCCTAAGTTCCGCAACTTGATCTACTACATGCTCTGCTCCATCGTTCTGCTGTGTATCTGTGCCAACTTGTACTTTCACGATGTGGGACGTGATAAACAGAGCAATGCCTTATAAAAACCACAGGAAGCGCAGAATGTTCATCGTTATGTGGGAGCTTTGGAAACCCACATAAACCCCACCTGAATTCTTGAATCAGGAGAATTCATTTTCCTACAAGCCCCGTTTGTGTGGGCAGGCCAGTCTGCCTTTGGGAGCCATATTAATGCACATAAACATATTATAGATGCAAATATGTTAGCGATCAGTAGCACTCTGGGATGTCCGTGCACATGTTTGCACCCTCTATGCTGTACACAGCTTAACTTATATGCCAATGTAAAGACAAGAGCAGAGTTT
>TCONS_00053455
ACGTCACTTCCGGTTTCATGCACCGAGCCGTCATTACTGCTGCTCTTTTGAAGTCATGCGGATAATACGCTGATCGGAATATCAATAAATCCCCCCGCTTGCTTCATCAAGagctaaaaacaacaacaacaaaaaagagtcATCCTTCTCGTCTTCCATCCTCAGATATTTGTGCTCCTGCACTAATTATATTTAGGATTTCTGAGTCCTCAAACCTTCATCATGATGAATATTTGCATCATACTGCAAGGTAGCCAACCATGAGTGTGATGTGCTTGTAAATCGCTTGCTGTGAGGAGAGAAGCGCGATCATGCACCGCCATCCTCCACGCCAGAAGAGCTGCAGCTGCTAGAAGGACTCAGGGAAGTGTGTATGTGTCGCTCTGGCCATGGATGACTTCACTACACGCACCTATGGCACCAGTGGCATGGACAACAGGCCTCTGTTCGGAGAGACCTCGGCCAGGGATAGAATCATCAATCTAGTAGTCGGTGGACTTGCATCTTTACTTGTTCTGGTGACCATCATTAGCTCATTCGTCTTTCCTTCACTGCCTCCCAAACCACTCAATATATTCTTTGCCATCTGCATCATGCTAGTCTGCGGCTCAGTGTTGGTTCTGATATACTGGTATAGGCAGGGAGATCTGGAGCCTAAGTTCCGCAACTTGATCTACTACATGCTCTGCTCCATCGTTCTGCTGTGTATCTGTGCCAACTTGTACTTTCACGATGTGGGACGTGATAAACAGAGCAATGCCTTATAAAAACCACAGGAAGCGCAGAATGTTCATCGTTATGTGGGAGCTTTGGAAACCCACATAAACCCCACCTGAATTCTTGAATCAGGAGAATTCATTTTCCTACAAGCCCCGTTTGTGTGGGCAGGCCAGTCTGCCTTTGGGAGCCATATTAATGCACATAAACATATTATAGATGCAAATATGTTAGCGATCAGTAGCACTCTGGGATGTCCGTGCACATGTTTGCACCCTCTATGCTGTACACAGCTTAACTTATATGCCAATGTAAAGACAAGAGCAGAGTTTTTGAGATAAGCCATCCACAATGCTTTTATATTTGTACATGATACATCTACGGTACACATTCCTAATGAAGAAATtgcttattttgtatttaaattattagaAAAGCAATCTCGAATAAGAGCACTTGGTTAAAAACATGCAGCGGTTGTTgagaaattgtttgtttttttgttcatttttttctaaattaatgaACAGTGTTCTTTGATTGGGTGAAAACCTTATATTTTTGGTTATAACCTGGTGTAATTTGGTTTTAtgtaatgaataaatacatatacactg
>TCONS_00053456
ATTACTGCTGCTCTTTTGAAGTCATGCGGATAATACGCTGATCGGAATATCAATAAATCCCCCCGCTTGCTTCATCAAGATATTTGTGCTCCTGCACTAATTATATTTAGGATTTCTGAGTCCTCAAACCTTCATCATGATGAATATTTGCATCATACTGCAAGGTAGCCAACCATGAGTGTGATGTGCTTGTAAATCGCTTGCTGTGAGGAGAGAAGCGCGATCATGCACCGCCATCCTCCACGCCAGAAGAGCTGCAGCTGCTAGAAGGACTCAGGGAAGTGTGTATGTGTCGCTCTGGCCATGGATGACTTCACTACACGCACCTATGGCACCAGTGGCATGGACAACAGGCCTCTGTTCGGAGAGACCTCGGCCAGGGATAGAATCATCAATCTAGTAGTCGGTGGACTTGCATCTTTACTTGTTCTGGTGACCATCATTAGCTCATTCGTCTTTCCTTCACTGCCTCCCAAACCACTCAATATATTCTTTGCCATCTGCATCATGCTAGTCTGCGGCTCAGTGTTGGTTCTGATATACTGGTATAGGCAGGGAGATCTGGAGCCTAAGTTCCGCAACTTGATCTACTACATGCTCTGCTCCATCGTTCTGCTGTGTATCTGTGCCAACTTGTACTTTCACGATGTGGGACGTGATAAACAGAGCAATGCCTTATAAAAACCACAGGAAGCGCAGAATGTTCATCGTTATGTGGGAGCTTTGGAAACCCACATAAACCCCACCTGAATTCTTGAATCAGGAGAATTCATTTTCCTACAAGCCCCGTTTGTGTGGGCAGGCCAGTCTGCCTTTGGGAGCCATATTAATGCACATAAACATATTATAGATGCAAATATGTTAGCGATCAGTAGCACT
>TCONS_00053457
TGAATTGCAGCTCCTGGTTAAATAGTATCCTAATTTAACTCTGCAGATTCTGTGATGAGACTATTGtgaatgcacacattgtgatatcgatgctaaaaagatatattgtgcagccctaatttggaTGAAATCGATAAAATCCGGCTAGATTTGACATTAAGCtggtttgtttactgcagcaaccAAGGAAACATCATTATTCCTGATGTTATTTTAGGCGTCACctgcagaattttcatttttattcagtatatgaaaacattttaatttaggaGAAGTTTCTTACGATCAgtgtttagtaaatatactgcaagttGGCGATGATGCCCTAAAATGTATATAAGGtgtctttaaaaaggttttttCTCTCTGATTTCTGTATATAAGTTTAAATGACTCCACAATGTTGTCAACCATAaagtctggtcaactataatcacCACTACATTGCAGAgccttgtgatgtgactattgcagactcacacattgcaatatcaatgatAAACGgatatatagtgcagccctaataaCAATCAGTGTAAGCAAATGACCAGACACTAACAGTGCGTTTGTTTTATTTGGTTACAgagctaaaaacaacaacaacaaaaaagagtcATCCTTCTCGTCTTCCATCCTCAGATATTTGTGCTCCTGCACTAATTATATTTAGGATTTCTGAGTCCTCAAACCTTCATCATGATGAATATTTGCATCATACTGCAAGGTAGCCAACCATGAGTGTGATGTGCTTGTAAATCGCTTGCTGTGAGGAGAGAAGCGCGATCATGCACCGCCATC

Function

symbol description
tmem243b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM243 (transmembrane protein 243).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2205 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM243 (transmembrane protein 243).

Ensembl:

ensembl_id ENSDARG00000033179

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053454 False 944 mRNA 0.47 5 9612574 9619272
TCONS_00053455 False 1334 mRNA 0.42 6 9612608 9619557
TCONS_00053456 False 879 mRNA 0.46 6 9612640 9619188
TCONS_00053457 True 801 lncRNA 0.37 2 9614393 9616062

Neighbor

gene id symbol gene type direction distance location
XLOC_027124 meig1 coding upstream 699 9609905 ~ 9611875 (+)
XLOC_027123 hspa14 coding upstream 10883 9592486 ~ 9601691 (+)
XLOC_027122 lsm8 coding upstream 73150 9536860 ~ 9539424 (+)
XLOC_027121 kitlgb coding upstream 97176 9508505 ~ 9515398 (+)
XLOC_027120 lmf2b coding upstream 109728 9478500 ~ 9502846 (+)
XLOC_027126 NA coding downstream 3734 9623291 ~ 9634704 (+)
XLOC_027127 ELAPOR2 coding downstream 50160 9669717 ~ 9690419 (+)
XLOC_027128 BX901962.4 coding downstream 60283 9679840 ~ 9724792 (+)
XLOC_027129 NA coding downstream 107238 9726795 ~ 9730672 (+)
XLOC_027130 hsp90b1 coding downstream 216908 9836465 ~ 9843836 (+)
XLOC_027116 NA non-coding upstream 259942 9346919 ~ 9352632 (+)
XLOC_027115 NA non-coding upstream 265871 9340827 ~ 9346703 (+)
XLOC_027113 NA non-coding upstream 409506 9197350 ~ 9203068 (+)
XLOC_027111 NA non-coding upstream 463620 9107259 ~ 9148954 (+)
XLOC_027107 NA non-coding upstream 726851 8874565 ~ 8885723 (+)
XLOC_027131 NA non-coding downstream 248353 9867910 ~ 9889097 (+)
XLOC_027135 NA non-coding downstream 438544 10058101 ~ 10061448 (+)
XLOC_027141 NA non-coding downstream 1095188 10714745 ~ 10715592 (+)

Expression


Co-expression Network