XLOC_027129


Basic Information

Item Value
gene id XLOC_027129
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9726795 ~ 9730672 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057624
CTTATAAACAACAAACTCATGTAAGAAATTAATTTCAAAAACTTGGTGACTATATTGCTACAGTCTTAAAAATGTCACTAGAAATTAATTCCATGTGACAAAAACTGAACCTTAATGGACAAGTCAAAACATTCCACAAATACTCACAATATCATGAGCTCAGATTCATAACGCACGAGAGCATTCTTCTCCTGCACCAGTTTGAACCACTGATGCATTAAGCTTGGATCGTCTTTCTTTCccATACCACACAGATGTACATCCAAGAGGACAGAGGTACTAGAGTCTTCCCAGAAGTCTACATCATGAGGAAGGACATGTCATGAGGATTGTGACCATCAAAAATATGAGCTGCActgcttttgcatttttttatgtaaatatgatCGTATAATGAATGCAGCAAGAAAAGATGTATGCAGACAAACATATGATGGCTGTGAACAGGGAGGGATGATGATAATTCACAGTACATAACATAAGTAGTCATGCATCACAAAAAGCctgaaaatatgaaataaatacatataataggATTTTAACTCAAAGTAATTAGGGGGTGGGACAGTGGAAGCATTTACATACTTACAtataaaaaacctttaaaaaaagtatgttatatatatagatagatagatagatagatagatagatagatagataga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057624 True 665 lncRNA 0.34 2 9726795 9730672

Neighbor

gene id symbol gene type direction distance location
XLOC_027128 BX901962.4 coding upstream 2003 9679840 ~ 9724792 (+)
XLOC_027127 ELAPOR2 coding upstream 36376 9669717 ~ 9690419 (+)
XLOC_027126 NA coding upstream 92091 9623291 ~ 9634704 (+)
XLOC_027125 tmem243b coding upstream 107238 9612574 ~ 9619557 (+)
XLOC_027124 meig1 coding upstream 114920 9609905 ~ 9611875 (+)
XLOC_027130 hsp90b1 coding downstream 105793 9836465 ~ 9843836 (+)
XLOC_027131 NA coding downstream 137238 9867910 ~ 9889097 (+)
XLOC_027132 sbf1 coding downstream 180371 9911043 ~ 10002050 (+)
XLOC_027133 naf1 coding downstream 272851 10003523 ~ 10012303 (+)
XLOC_027134 ccdc136b coding downstream 286377 10017049 ~ 10049186 (+)
XLOC_027116 NA non-coding upstream 374163 9346919 ~ 9352632 (+)
XLOC_027115 NA non-coding upstream 380092 9340827 ~ 9346703 (+)
XLOC_027113 NA non-coding upstream 523727 9197350 ~ 9203068 (+)
XLOC_027111 NA non-coding upstream 577841 9107259 ~ 9148954 (+)
XLOC_027135 NA non-coding downstream 327429 10058101 ~ 10061448 (+)
XLOC_027141 NA non-coding downstream 984073 10714745 ~ 10715592 (+)
XLOC_027143 NA non-coding downstream 1033605 10764277 ~ 10791239 (+)
XLOC_027144 NA non-coding downstream 1085458 10816130 ~ 10826992 (+)

Expression


Co-expression Network