G804783 (mapre1)


Basic Information

Item Value
gene id G804783
gene name mapre1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41672828 ~ 41681329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU915782
TAGGTTAttaatttttttaatatttttttttactcattaaGAATAAAGCAATTCAAAAAAATAATCTGATCTTCTAGCGCAGACTGGCAGTTCTATTTGCATATCAGCGTTTTGGGCCTCAGAACCTGTCACTGGTGCAGTTGCTACATGATCAAAACAAACTCACAACTGGAGTGTTAAAACATGCTACAGAACCAGGAGTATTCTGTTTGTTGAGTAAGTagaaatgaaagaaaaaaaaacccaGCAAAGTCACTCACCTTTCACATTTACCTAAGAGGATGAATTAGACGAGAGGCTAAATCAAGTTAAAACCTCCATCCCCTGCCAACTGACAAATTATATATCGGGAGAAAAAAGACAAAAAACCCAAAGCAGGTAGTTTGGGATGGGCTTGGGACCAGGGGAGTTTCTGGCATCCACAGTGCCTTCCAACAGCCAAGAGACAAACAAAACAGATAAATCACGCACAAAGTATTCCACCGGAAACTTGTAGTTCTAACATGTTTCTTCAGCATTAAATATTGTCATGTTATGAGCTGTCCTGTATCTTTGagaaaataatgataataataatatccaCTTTCCTGGAATAAAGAATAGCACTATTTAAAACAGGTTCATCTCCAAACTGGATGAGACCAAattaaagaattttgaaaatatgaGAGTTGTGGTTAGTGAAGAAAACAATTCTTCCACAATAAGTACACTAACCTTTCATTGAACCCATCAAAAAAACTCTATTGAAATGATTAGGAACTTAGTACATTTTCTCAGACCCATAAAACAATATACATGTGGGAAAGACTGTGATAATTTGGGAAACAAGTCAACTAAGAAAAATAcaatgtacaaaagtgagtgcaGGTGCCAACAAACTTTTAACTCCAATTCCCGGAAGAGACAGAAAATTAGGGAAAATACCAAGAAAAAAAGCAGAATCTTAGACTGACAGTTCACTCTTCTAGACCCAAATAGAGAGCCAAAATAGTCGCCTTCTTCCAACATGATGCCAAGACCGACCCTGGCACAGGCCAATAGGATGACCCAAAGAAGGGGCTTCAGAGGTACTTCACACTACTTATTTCAACTTGATCTGAGAgacaatttttgttgttgttgttgatatagtCTATTCAGAGACCAAGCAATGAATAACATGATCTGGATGTTTAGGGTGTGTTACGCAGGGTGAGGATGGGAGCTGTTGTAGCTGATTGAAGGGGCTGGGAGGAGGGGGAGTAGTATTAAAAGTTGCACGGTCCAGTCTTGAACATTAGAACTCCTCGTGGTCCTCTGACTCAGCGTCCCCTCAGTTTGCCAAAATAGAAGTCCCGCTCCTTTTCCATGTCCTGGATGGTGGACTTCAGTATATTCACTTCCTGGATTAGTTCAGCCCGCTCCTCGTCACCTCCGCCAGCCCCTGGTCTTCGTCCCGAGCTGGGCGCCATTTTGGGTGCTACCTTGGCAACTGCTGCCCGCTGGGGTGCAGCATTGAGGATCTTTTTGGGTTTGTTGAGGGCAGACACGGCAGGGCTGGGCATGGTGTCTTGGCCCTGGCGAGCCTCCACAGGGTCGTACTCCTTCCCATCGTAGTTGGCATCAAAGAACTTCTTGAACCACTGCACATACTCAAAGTTGTCCTGGAACTTGCCTTTTATCAACTTGTCAACAGGGATGTTTGTCAACACCCATTCTTTTGAAGCCAGCTTGCAAGATCTTGTAGTTGTGAATGAATTCGTGCTCTAGTTTGGCAGCAAATTTGACTTTCTTCAAAGGCACACAGCCGGGAAAAAGCATGTCCATGAACTGGCAGTAGGCCGCACCTGAACATAACAGCTCTATCTTGGTAAGGTTGATCTGTAACGATTCATTAATCCATGCAAGCATGTCATGGCGACTCAAATTGTCACTGCACACTGAGGTTGAGTAAACGTTCACAGCCATTTTCTTGTTTTGGAATGTCTTTCAGAACTCTAGGTGTTGCTAATATATTAATTCAACGTAAACTGTTTCTCATATAAATACAGACGTCAATGTTTGCTACTCTTTTCTTCTCCTGGTAGCCAGTTCCGAGTTCAATAATGCCGGCGACAGCGGGTTGATTCCTTTCAGCGCGACTGCGTGCGTAGCGATGGGGAGCAGCTTGGTCGGTGCTATCtggaatcCTTGGGCGAGGCTAGACCTA
>TU915784
TGGCGTAGAGTATATCTACAATCCTCTGCAGTGTGGGGTCGCCCTCGCCTTCCTTCTCTTGGCAGATGAGCTCAATGTTCCTCAGTTTGCCAAAATAGAAGTCCCGCTCCTTTTCCATGTCCTGGATGGTGGACTTCAGTATATTCACTTCCTGGATTAGTTCAGCCCGCTCCTCGTCACCTCCGCCAGCCCCTGGTCTTCGTCCCGAGCTGGGCGCCATTTTGGGTGCTACCTTGGCAACTGCTGCCCGCTGGGGTGCGCATTGAGGATCTTTTTGGGTTTGTTGAGGGCAGACACGGCAGGGCTGGGCATGGTGTCTTGGCCCTGGCGAGCCTCCACAGGGTCGTACTCCTTCCCATCGTAGTTGGCATCAAAGAACTTCTTGAACCACTGCACATACTCAAAGTTGTCCTGGAACTTGCCTTTTATCAACTTGTCAACAGGGATGATCTTGAGAGGAACAAATAACCATGTTAGTGGATTCAACACCACAAAAATGGGTTAGATAAACACTAGTGGATGGCAACGCCAGACACAGTTGATTTAGCCTAAACATGCATTGCAGAGGTAACTACCGT

Function

symbol description
mapre1 Enables identical protein binding activity; microtubule plus-end binding activity; and protein kinase binding activity. Involved in cell migration; protein localization to microtubule; and regulation of microtubule polymerization. Located in focal adhesion and microtubule cytoskeleton. Colocalizes with spindle.

NR:

description
microtubule-associated protein RP/EB family member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU915782 False 2191 lncRNA 0.42 8 41672828 41681329
TU915784 True 578 lncRNA 0.51 3 41674600 41675584

Neighbor

gene id symbol gene type direction distance location
soga1 LOC106572256 coding upstream 98885 41498311 ~ 41573943 (+)
LOC110532096 LOC106572259 coding upstream 219906 41423598 ~ 41452922 (+)
LOC110531178 LOC106572259 coding upstream 308851 41252666 ~ 41363977 (+)
si:dkey-72l14.3 LOC106572263 coding upstream 585657 41081452 ~ 41087171 (+)
LOC110532080 LOC106572270 coding upstream 753845 40916110 ~ 40918983 (+)
LOC110531179 commd7 coding downstream 63075 41744404 ~ 41755977 (+)
LOC110532105 LOC106572251 coding downstream 124644 41805973 ~ 41935192 (+)
LOC110532108 LOC106572252 coding downstream 254261 41935590 ~ 41957365 (+)
LOC110532106 LOC106572250 coding downstream 286409 41967738 ~ 42001368 (+)
LOC110532114 LOC106572334 coding downstream 340167 42021496 ~ 42027071 (+)
G804765 NA non-coding upstream 38891 41633701 ~ 41633937 (+)
G804753 NA non-coding upstream 47878 41624740 ~ 41624950 (+)
G804750 NA non-coding upstream 49695 41622822 ~ 41623133 (+)
G804646 NA non-coding upstream 85637 41586871 ~ 41587191 (+)
G804594 NA non-coding upstream 96708 41574669 ~ 41576120 (+)
G804792 NA non-coding downstream 15865 41697194 ~ 41697574 (+)
G804798 LOC106572254 non-coding downstream 30198 41711527 ~ 41712007 (+)
G804829 NA non-coding downstream 65581 41746910 ~ 41747198 (+)
G804855 NA non-coding downstream 99504 41780833 ~ 41781841 (+)
G804948 NA non-coding downstream 112533 41793862 ~ 41794080 (+)
G803728 NA other upstream 651326 41020936 ~ 41021502 (+)
G803457 NA other upstream 1204826 40467628 ~ 40468002 (+)
G803437 selenok other upstream 1222889 40442896 ~ 40449939 (+)
LOC110532068 LOC106571971 other upstream 1283776 40375272 ~ 40393967 (+)
G805451 NA other downstream 650764 42332093 ~ 42332438 (+)
G805600 NA other downstream 664847 42346176 ~ 42348786 (+)
G807677 NA other downstream 2514386 44195715 ~ 44196041 (+)
G807841 NA other downstream 2761333 44442662 ~ 44453077 (+)

Expression


Co-expression Network