G805160


Basic Information

Item Value
gene id G805160
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42000160 ~ 42003843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU916186
TATGGTTCAGTCACACAGTAGATTTGCAAGCATCTGCATTTAGCAACATTCTGcacataaaatacaaatatgaATCTTGCAGCTAGCAAATCCCTGGCACCCATGACTGTTCCCAAAGAAACTAACAGATATATTCAAATACGAATGTCAAAAATCAATTTACACATGATTATCCCTTTATATGATTCAAAATTGCTCTTCCATTTTTGGAGAGCATACAAACTATAATGAAAtctagacatacagtacatcaataacaggctgtgtgtatcatGATTCATAAATGTTAGTGCTAAAGTAGCATTttaacaaaaataaaacaatgtaATAAGGCAATTCTTATTGATTCTGAGTCCAGCATatcagtagcctggtcccagatctgtttgttctgtcttgccATCTCCTATGGTTGTTCGAATGCCAAAtcgaccataggagttggctttacagcacaaacagatctgagaccaggctagtgtATCAGTAGGCACACGGGTATTATTTAGATGACCATATTTGGTCATATTTACCCTCTGAAAATACTGAGTGACACCATTCCTCAGAGAGAGTGGAGTCATCTGACACACCACGTTGAGGCCAGATGTGCTGAGCGTTGGCACTGGTGCAATGTTTGAAACCGGTTCATTTTCTAACATATTTTCGAACATAACAAGTTAGGAAAAAGGTAAATAGCTTTTAGCTTTGTATTTTGGTCTCTTTGATTCCCTTCCGAAAATGATAGGTGCAAATTTGCACTGGTGCAAATGATAAGTATATCTGGCCCCAAGTCTTCTAGGCTGTCAGATTAACAGACGGATCATAATTTCCCAGCAAAAAAAAACTAACGGAGGTTAGTCCAGAAAAATAAGGCTTGCTTATTGCATAGTACAGTACTTCAACTCAGTTTTACCCCTCCTGTGATGGCTACGTCCAGATATGGGGGAACTTAAATTCTACCAATTCATACAGTACCTGCAAAGGCACTCTGGGCCTTCTTTGTATGCGCATAAGCAATGGCATCTACATTAAGGCAATCTCAGAACGAACCtaaatctgacttcagtgagtgAAGATTGACGTCGTGTCCAGTACGTGAAATGCATTTTCCCTGTCAACGcgtaggcctagattcaatcagatgaAGCTTTAAACGGCGATAGCCAACACCCACATAGCTGATATTTTGCCGGTGTCGGAGGTGTAACTGCGTTGACGCTGTCAAATAGGGGAGCAGCTGCTCTTGTGATCATTGCCACTAAGCCAGAGTTCTGAATGcaaaaatgtaggctacagttgaagtcggaagtttacatacaccttagccttatacatttaaactcagtttttcacaattcctgacatttaatcctagtatttggtagcattgcattgaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagtttcccacaaaagttgggtgaattttggcccattcctcctgacagagctggcctccttgcctgCACACGcttattcagttctgcccacaaattttctatgggattgaggtcagggctttgtaatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcaaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacagaattttccttcctcatgtcaATTAGCCATCAGAAGCATCTAAACccatgacaacattttctggaattttccaagcttttaaaggcacagtcaactttgtgtatgtaaacttctgacccactggaattgtgatattacaagtgaattataagtgaaataatctgtaaacaattgttggcaaaattacttgtgtcacgcacaaagtagatgtcctaaccgacttgcaaaaactatagtttttaattattattatttgtttttttttacccttttttctccccaatttcgtggtatccaattgttgtagtagctactatcttgtctcattgctacaactcccgtgcgtcctccgatacacaacgcAACCAGCAGaacctgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggatctccttgtctcatcctaacccggacgaagctAGGCCAATtctgcgtcgccccacggacctcccgggcgaacccagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggcccaaaactatagtttgttaaacaagacatttgtggagtggttgaaaaacaagttttaatgactccaacctaagtgtatgtaaacttctgacttcaactggatGTAGAAATAATGATGCTCAAATTGAAAATCACTCAACTgaataatgaggatttctatcagcctaatccaggtgtagattacatctcacggTTCAGCGTTCCAACTTGTAAATAACGCTGCATGGAATTTCTGTTCATGCGACTCTCTGCGGCTAATGGCGATGTCTGCTTTAGGTATAGTGCTCggagccgcttgtggatttgacagttCTAATGCAGTTCCACCTCAGGCACCGCCAAAACAACTGCTATGCAGATGTCGGCTAGCGTGGATCTGATAGAACCTAGGCCTTATTttgaattataaactgggtggttcgagccctgaatgctgattgtctgaaagTCGTGGTATATCAgcccgtataccacgggtatgacaaaacatttatttttactcttctaattacgttggtcaccagtttataatagcaataaggcacctcgggggtttgtggtatatggccaatataccactgctaagggctgtatccaggaacTCCACGttgtgtcgtgcataagaacagcccttaactGTAATAAATTGGGCATACACCACatcccctcgggccttattgcttaaatatatcctATGGATCACTGAATGCTTTGCTAGATCACTAATGGCTGAATATGTCCGGTTTCCTTGATCTTAACATGGTTAGGATGAATACTGGGGTGAATACACAGTAAAATGACCATAGGCGTACAGTAAGTTGAGTGTGTGTGGAGATACTTGTGTTTAGTAGGGGTGACCGCTCTGATCAGTGGTAGGCCAATGAGGATCAGTGAGGAGGAACCAACACTGCACCTTATTGTGGAATACAAGTTCGTCCCTATATGGGTAAACCGGTGAAGCACCAATAGTTTCCACAGGGCTCCTCTTAGATCAACTGGAAACCTGCTGAAGAAAAGGGGGACCACAGCATTGAGGAACAAAGGcatttcctccatcatcttcccCGGGTCAGGTGGTGGGGTAGCCAGGGGCCGGAGGGTCAAGGGTCAGCTCCTACTGCCTCTCCGTCCTTCTCCAGCTCCTCCTGGATCTCATCACTGTTCCCTGAGTCGCTGCTCGCTACC
>TU916187
TATGGTTCAGTCACACAGTAGATTTGCAAGCATCTGCATTTAGCAACATTCTGcacataaaatacaaatatgaATCTTGCAGCTAGCAAATCCCTGGCACCCATGACTGTTCCCAAAGAAACTAACAGATATATTCAAATACGAATGTCAAAAATCAATTTACACATGATTATCCCTTTATATGATTCAAAATTGCTCTTCCATTTTTGGAGAGCATACAAACTATAATGAAAtctagacatacagtacatcaataacaggctgtgtgtatcatGATTCATAAATGTTAGTGCTAAAGTAGCATTttaacaaaaataaaacaatgtaATAAGGCAATTCTTATTGATTCTGAGTCCAGCATatcagtagcctggtcccagatctgtttgttctgtcttgccATCTCCTATGGTTGTTCGAATGCCAAAtcgaccataggagttggctttacagcacaaacagatctgagaccaggctagtgtATCAGTAGGCACACGGGTATTATTTAGATGACCATATTTGGTCATATTTACCCTCTGAAAATACTGAGTGACACCATTCCTCAGAGAGAGTGGAGTCATCTGACACACCACGTTGAGGCCAGATGTGCTGAGCGTTGGCACTGGTGCAATGTTTGAAACCGGTTCATTTTCTAACATATTTTCGAACATAACAAGTTAGGAAAAAGGTAAATAGCTTTTAGCTTTGTATTTTGGTCTCTTTGATTCCCTTCCGAAAATGATAGGTGCAAATTTGCACTGGTGCAAATGATAAGTATATCTGGCCCCAAGTCTTCTAGGCTGTCAGATTAACAGACGGATCATAATTTCCCAGCAAAAAAAAACTAACGGAGGTTAGTCCAGAAAAATAAGGCTTGCTTATTGCATAGTACAGTACTTCAACTCAGTTTTACCCCTCCTGTGATGGCTACGTCCAGATATGGGGGAACTTAAATTCTACCAATTCATACAGTACCTGCAAAGGCACTCTGGGCCTTCTTTGTATGCGCATAAGCAATGGCATCTACATTAAGGCAATCTCAGAACGAACCtaaatctgacttcagtgagtgAAGATTGACGTCGTGTCCAGTACGTGAAATGCATTTTCCCTGTCAACGcgtaggcctagattcaatcagatgaAGCTTTAAACGGCGATAGCCAACACCCACATAGCTGATATTTTGCCGGTGTCGGAGGTGTAACTGCGTTGACGCTGTCAAATAGGGGAGCAGCTGCTCTTGTGATCATTGCCACTAAGCCAGAGTTCTGAATGcaaaaatgtaggctacagttgaagtcggaagtttacatacaccttagccttatacatttaaactcagtttttcacaattcctgacatttaatcctagtatttggtagcattgcattgaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagtttcccacaaaagttgggtgaattttggcccattcctcctgacagagctggcctccttgcctgCACACGcttattcagttctgcccacaaattttctatgggattgaggtcagggctttgtaatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcaaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacagaattttccttcctcatgtcaATTAGCCATCAGAAGCATCTAAACccatgacaacattttctggaattttccaagcttttaaaggcacagtcaactttgtgtatgtaaacttctgacccactggaattgtgatattacaagtgaattataagtgaaataatctgtaaacaattgttggcaaaattacttgtgtcacgcacaaagtagatgtcctaaccgacttgcaaaaactatagtttttaattattattatttgtttttttttacccttttttctccccaatttcgtggtatccaattgttgtagtagctactatcttgtctcattgctacaactcccgtgcgtcctccgatacacaacgcAACCAGCAGaacctgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggatctccttgtctcatcgcgcaccagcgactcctgtggcgggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU916186 False 3473 lncRNA 0.43 5 42000160 42003843
TU916187 True 2190 lncRNA 0.41 3 42001598 42003843

Neighbor

gene id symbol gene type direction distance location
LOC110532109 NA coding downstream 5649 41992351 ~ 41994511 (-)
LOC110532110 NA coding downstream 31207 41955175 ~ 41968953 (-)
LOC110532104 LOC106572254 coding downstream 243368 41693922 ~ 41756792 (-)
LOC110532103 mapre1 coding downstream 318770 41672687 ~ 41681390 (-)
LOC110532102 LOC106572255 coding downstream 334648 41643182 ~ 41665512 (-)
LOC110532116 LOC106572333 coding upstream 71734 42075577 ~ 42076849 (-)
LOC110533012 LOC106572332 coding upstream 81488 42085331 ~ 42087302 (-)
rnf207b LOC106572244 coding upstream 94427 42098270 ~ 42114365 (-)
LOC110532119 LOC106572245 coding upstream 121412 42125255 ~ 42141613 (-)
LOC110532120 LOC106572241 coding upstream 151242 42155085 ~ 42160574 (-)
G805210 NA non-coding downstream 32798 41967160 ~ 41967362 (-)
G805190 NA non-coding downstream 38660 41909166 ~ 41961500 (-)
G804908 NA non-coding downstream 260005 41739582 ~ 41740155 (-)
G804902 NA non-coding downstream 268914 41730824 ~ 41731246 (-)
G804885 NA non-coding downstream 306325 41693509 ~ 41693835 (-)
G805246 NA non-coding upstream 21430 42025273 ~ 42027035 (-)
G805253 LOC107745311 non-coding upstream 32052 42035895 ~ 42036370 (-)
G805254 NA non-coding upstream 32959 42036802 ~ 42037011 (-)
G805256 NA non-coding upstream 35273 42039116 ~ 42039543 (-)
G804543 LOC106572259 other downstream 562189 41437030 ~ 41437971 (-)
G804255 NA other downstream 1014915 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 1084186 40904738 ~ 40916073 (-)
G804307 NA other downstream 1087802 40862589 ~ 40912358 (-)
G804137 LOC106572278 other downstream 1426210 40571014 ~ 40573950 (-)
G806724 LOC106572208 other upstream 1328087 43331930 ~ 43339589 (-)
prdm16 prdm16 other upstream 1936723 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 2244955 44247091 ~ 44292397 (-)
G807941 NA other upstream 2357573 44361416 ~ 44362166 (-)

Expression


Co-expression Network