XLOC_027135


Basic Information

Item Value
gene id XLOC_027135
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10058101 ~ 10061448 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057627
aggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaacacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcatgcattagaacaatatatacattttaagataattaaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaAGGAAAAAGGCAGAAATTCTGCCCGTCtgagcacattttattcattgtacaacacaaaactaaacaaaaaaatagcttaatctaccacacacacacacacacacacacacatatatatatatatatatatacaggtgtacattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATGTATATGAAATGTCTACATTGTTTAGGCATATGTGATTGTAtgagataaaatgcatttattatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgcttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccatttgttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCAATCAACTGCCCACATTGGGGTTTAGGAAATTAGAACTGCTTATGCTGCTTGTCTACTAGTCTTAGGATAAGttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtatttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtattttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagctctttGATGTTCACCTAAGAAAATTAgattagaagatataaactgttatgcacttgttctgtactgtttcattcctttttcaaacactggcattttaaaggtttatttaCAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTGttggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTTGCCGACCTATTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTGGTTGTTCAGTAACCTATTTTAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactcTGCTGACCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTATTGTGGCAGAGATGGCCATCCACTATAAATACCTTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTTCTGAAAAGTActggtatgtatttgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagag
>TCONS_00057131
CTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactcTGCTGACCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTATTGTGGCAGAGATGGCCATCCACTATAAATACCTTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTTCTGAAAAGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtttgacattgactgtggattttattttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtc

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035282 segmentation biological_process
GO:0048793 pronephros development biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057627 False 3112 lncRNA 0.34 2 10058101 10061303
TCONS_00057131 True 580 lncRNA 0.39 4 10060603 10061448

Neighbor

gene id symbol gene type direction distance location
XLOC_027134 ccdc136b coding upstream 8915 10017049 ~ 10049186 (+)
XLOC_027133 naf1 coding upstream 45798 10003523 ~ 10012303 (+)
XLOC_027132 sbf1 coding upstream 56051 9911043 ~ 10002050 (+)
XLOC_027131 NA coding upstream 169004 9867910 ~ 9889097 (+)
XLOC_027130 hsp90b1 coding upstream 214265 9836465 ~ 9843836 (+)
XLOC_027136 flncb coding downstream 5392 10066840 ~ 10130349 (+)
XLOC_027137 kcnd2 coding downstream 304409 10365857 ~ 10562174 (+)
XLOC_027138 ing3 coding downstream 542662 10604110 ~ 10615355 (+)
XLOC_027139 cped1 coding downstream 555178 10616626 ~ 10704585 (+)
XLOC_027140 wnt16 coding downstream 645307 10706755 ~ 10713584 (+)
XLOC_027129 NA non-coding upstream 327429 9726795 ~ 9730672 (+)
XLOC_027126 NA non-coding upstream 423397 9623291 ~ 9634704 (+)
XLOC_027116 NA non-coding upstream 705469 9346919 ~ 9352632 (+)
XLOC_027115 NA non-coding upstream 711398 9340827 ~ 9346703 (+)
XLOC_027141 NA non-coding downstream 653297 10714745 ~ 10715592 (+)
XLOC_027143 NA non-coding downstream 702829 10764277 ~ 10791239 (+)
XLOC_027144 NA non-coding downstream 754682 10816130 ~ 10826992 (+)
XLOC_027149 BX784029.3 non-coding downstream 1141493 11202941 ~ 11238022 (+)
XLOC_027150 BX649349.1 non-coding downstream 1224481 11285929 ~ 11289783 (+)

Expression


Co-expression Network