G805694


Basic Information

Item Value
gene id G805694
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42532382 ~ 42579499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU916764
gagacactgtggcccactccgaggacacccctggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacaaagacctccgccacggcacaacccaagggggggggggggggggggggggggcgccaacccagacaggatgaccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtattgaagcaacatctaaaggcatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatatttccaaagttggggcaaaatgacttcaggacaacaaagtcaaggtattggagtggtcatcacaaagccctgacctcaatcctatagaaaatttgtgagcagaactgaaaaagtgtgtgcgagcagggaggcctataaacctggtttagttacaccagctctgtcaggaagaatgggcaaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaacgtttcacccaagttaaaccatttataggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccattgggaatgtgatgaaagaaataaaagctgaaaaaaaatattctctctactattattctgacatttcaaattcttaaaataaagtggtgatcctaactgacctaagacagggaattcttactaggattagatgtcagaaattgtgaaaaaactgagtttaaaagtatttggctaaggtgtatgtaaacttctgacttcaactgtacatatatagatagatagatagatagatagatagatagattttatttgacCATGTAAAACAATATACAACCACAAATGTGGATAATGCATTTAAAATCATCAAGCATGACACGAGACATGTTTTACGATCTATTTCCATTATAGTCTTAAATAAATGGTTCAAAAATGTACAAACATAAACATACTAGGCATACTTGGCTTACACATATAACACATGACATAACAGCCATAGTTGGCTTACACATATAGCTAACACATAACAAATCAAAGGATAGGAGACATTGTCATAGCCATAGAGCAGGACTCCCTCAACAGATCAGCGATCTCAGGCTCCTAAAATGAGATGATGGTTTGATGATGATGACGCAGTTGATGCCAGATGATGGTGATGAAGTTGGCTTGCCGGCTCTGATATATTATACAAGGGGGGTGTTCACAGGGTATCCTTTTCAAATGAATTATTGGGTATTAAAGCGTCTTGTTACTACAGTATTATCTATCATATACACCGAAGACTAAGCTTCACAGTTAAtaagtacactcttagaaaaaaaagtcgctatctagaacctaaaagtgttcttcagctgtccccataggataaccctttgaagataaatatttttggttccatgtaaaaccatttccactttccacagagggttctgtactcccaaaagggttctacctggaaccaaaaaggggttatacctggaaccaaaaacatTTATCTTATGGGGAAAGCCGAAGAATCCTTTCGGAATCCTTTTTTTCGAAGAGTGTAGGACAATGATGTCAGCAAATTTGAATATATACTTTTATATTAGCAAATTTCACATACACCTCCACTTGAACCTATGGATTTTAGAGGGCGACTCTACAGAAGGGGATTCGTAGTCTGTCAATCAGTTAAGGCAAGACATTTTGGAATTTACTGATTTTTATCCTTGTCTTGTTTGAACAATACAATGtaatgtaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgcgtgcgtgcgtttgtaCACACCACAAGTCACTGCTTTATGCATAGTGACTTTTTCTTTAGTATTGGACACATGCTGTAAATAATATACAAAATAGATCATTGTAGTTGTATAACCAGAATAAGAGTAAAATACCATGTAAGCTCTAACTTGTCAGTTACAGAGTTCTGTATCATTTTACAAAACAAATTATTTATTAGTGAGCTGTACAATTCTATTGTGCAGCCTACCAAAAAGAAAACGCTAATCTGTGTGTAGTGCCTAGGGTGATGGGGAAGTAGGCAGCAGAAGGAgatcttttgtgttttctttatctTTTATGTTAAAACAAAGTGCCACGACTGCTCTACTGACAGCTCTTCCCCTTTTTTTATGAGGTATTGTATGGTAGCTGGATATTTTGCTCAATAAAAACAAGCTGCACGCAGAGAACCACTTTCATGG
>TU916765
gagacactgtggcccactccgaggacacccctggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggctgagtatagcccacaaagacctccgccacggcacaacccaagggggggggggggggggggggggggcgccaacccagacaggatgaccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtattgaagcaacatctaaaggcatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatatttccaaagttggggcaaaatgacttcaggacaacaaagtcaaggtattggagtggtcatcacaaagccctgacctcaatcctatagaaaatttgtgagcagaactgaaaaagtgtgtgcgagcagggaggcctataaacctggtttagttacaccagctctgtcaggaagaatgggcaaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaacgtttcacccaagttaaaccatttataggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccattgggaatgtgatgaaagaaataaaagctgaaaaaaaatattctctctactattattctgacatttcaaattcttaaaataaagtggtgatcctaactgacctaagacagggaattcttactaggattagatgtcagaaattgtgaaaaaactgagtttaaaagtatttggctaaggtgtatgtaaacttctgacttcaactgtacatatatagatagatagatagatagatagatagatagattttatttgacCATGTAAAACAATATACAACCACAAATGTGGATAATGCATTTAAAATCATCAAGCATGACACGAGACATGTTTTACGATCTATTTCCATTATAGTCTTAAATAAATGGTTCAAAAATGTACAAACATAAACATACTAGGCATACTTGGCTTACACATATAACACATGACATAACAGCCATAGTTGGCTTACACATATAGCTAACACATAACAAATCAAAGGATAGGAGACATTGTCATAGCCATAGAGCAGGACTCCCTCAACAGATCAGCGATCTCAGGCTCCTAAAATGAGATGATGGTTTGATGATGATGACGCAGTTGATGCCAGATGATGGTGATGAAGTTGGCTTGCCGGCTCTGATATATTATACAAGGGGGGTGTTCACAGGGTATCCTTTTCAAATGAATTATTGGGTATTAAAGCGTCTTGTTACTACAGTATTATCTATCATATACACCGAAGACTAAGCTTCACAGTTAAtaagtacactcttagaaaaaaaagtcgctatctagaacctaaaagtgttcttcagctgtccccataggataaccctttgaagataaatatttttggttccatgtaaaaccatttccactttccacagagggttctgtactcccaaaagggttctacctggaaccaaaaaggggttatacctggaaccaaaaacatTTATCTTATGGGGAAAGCCGAAGAATCCTTTCGGAATCCTTTTTTTCGAAGAGTGTAGGACAATGATGTCAGCAAATTTGAATATATACTTTTATATTAGCAAATTTCACATACACCTCCACTTGAACCTATGGATTTTAGAGGGCGACTCTACAGAAGGGGATTCGTAGTCTGTCAATCAGTTAAGGCAAGACATTTTGGAATTTACTGATTTTTATCCTTGTCTTGTTTGAACAATACAATGtaatgtaatggtgtgtgtgtgtgtgtgtgtgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU916764 False 2445 lncRNA 0.40 2 42532382 42534870
TU916765 True 1957 lncRNA 0.40 2 42532382 42579499

Neighbor

gene id symbol gene type direction distance location
glut1b LOC106572233 coding upstream 3334 42496861 ~ 42529048 (+)
LOC110532129 LOC106572329 coding upstream 101329 42425082 ~ 42431053 (+)
LOC110532123 LOC106572239 coding upstream 285956 42237344 ~ 42246426 (+)
LOC110532122 LOC106572240 coding upstream 295743 42209835 ~ 42236639 (+)
LOC118966050 NA coding upstream 353061 42160412 ~ 42179321 (+)
LOC110533013 LOC106566826 coding downstream 72633 42652132 ~ 42689483 (+)
LOC110532140 LOC106566931 coding downstream 110794 42690293 ~ 42695335 (+)
foxp3-1 foxp3-1 coding downstream 119452 42698951 ~ 42747753 (+)
LOC110532144 LOC106572221 coding downstream 173777 42753276 ~ 42867302 (+)
LOC110532147 LOC106572219 coding downstream 323597 42903096 ~ 42911687 (+)
G805673 NA non-coding upstream 74550 42457630 ~ 42457832 (+)
G805640 NA non-coding upstream 130751 42401314 ~ 42401631 (+)
G805638 NA non-coding upstream 133527 42398645 ~ 42398855 (+)
G805601 NA non-coding upstream 186543 42345601 ~ 42345839 (+)
G805749 NA non-coding downstream 35361 42614860 ~ 42615200 (+)
G805779 NA non-coding downstream 82316 42661815 ~ 42664451 (+)
G805781 NA non-coding downstream 86270 42665769 ~ 42665983 (+)
G805786 NA non-coding downstream 98037 42677536 ~ 42677836 (+)
G805788 NA non-coding downstream 99645 42679144 ~ 42679349 (+)
G805600 NA other upstream 183596 42346176 ~ 42348786 (+)
G805451 NA other upstream 199944 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 507979 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1096959 41423598 ~ 41452922 (+)
G803728 NA other upstream 1510880 41020936 ~ 41021502 (+)
G807677 NA other downstream 1616216 44195715 ~ 44196041 (+)
G807841 NA other downstream 1863163 44442662 ~ 44453077 (+)
G809685 NA other downstream 3555232 46134731 ~ 46135732 (+)
G812143 NA other downstream 5402502 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5965955 48545454 ~ 48570593 (+)

Expression


Co-expression Network