G806141


Basic Information

Item Value
gene id G806141
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42884685 ~ 42885267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU917305
TTGGGAGGAAAAAGTTCTGTCCTGAACCACTAAAATGTTTATGAGCCATGAAATCCATGAGTGTCACGAAGCCATGAGTGCATTTGTATGTGTCACTGTActaggtacaccaccccattcACACCTACAGACATTTTCTattaaaggtatctttacttttactcaagtatgacaattgggtacttttatCCACCACTGGACGACCATAccaaaaacaagaagaagcggctccagtggtcacacgatcaccaacactggacaattaagGAGTGGGAAAACATTGCCTGATCCGACGAATCCCGATTCCTGTTGTGTCATGCTAATGGAAGTGTCCGGATTTGGCGtcagcagcatgagtccatggtcCCCCTAGCCACTTACCGCCGATGTTGTGAAAGGTTATAATGACTCCCGCTGCTATTTTTCCTGGGTGTCCAAAAGCACGGAAACCCAGCTGTTCATACGCACGAATACCTGAACAGACAAAAGAGACATTAGTCTGTGAAAGAGTAGAAACGGAACagaatctacagtgcctt

Function

NR:

description
vacuolar protein sorting 52

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU917305 True 539 lncRNA 0.45 2 42884685 42885267

Neighbor

gene id symbol gene type direction distance location
LOC110532144 LOC106572221 coding upstream 17383 42753276 ~ 42867302 (+)
foxp3-1 foxp3-1 coding upstream 136932 42698951 ~ 42747753 (+)
LOC110532140 LOC106566931 coding upstream 189350 42690293 ~ 42695335 (+)
LOC110533013 LOC106566826 coding upstream 195202 42652132 ~ 42689483 (+)
LOC110532136 LOC106572228 coding upstream 287988 42571812 ~ 42596697 (+)
LOC110532147 LOC106572219 coding downstream 17829 42903096 ~ 42911687 (+)
LOC110532148 LOC106572218 coding downstream 27116 42912383 ~ 42930990 (+)
LOC110532149 LOC106572217 coding downstream 49997 42935264 ~ 42963028 (+)
LOC110531181 LOC106572211 coding downstream 380250 43265517 ~ 43275006 (+)
taf10 LOC106572212 coding downstream 400574 43285841 ~ 43287979 (+)
G805788 NA non-coding upstream 205336 42679144 ~ 42679349 (+)
G805786 NA non-coding upstream 206849 42677536 ~ 42677836 (+)
G805781 NA non-coding upstream 218702 42665769 ~ 42665983 (+)
G805779 NA non-coding upstream 220234 42661815 ~ 42664451 (+)
G805749 NA non-coding upstream 269485 42614860 ~ 42615200 (+)
G806227 NA non-coding downstream 34265 42919532 ~ 42920390 (+)
G806243 NA non-coding downstream 84508 42969775 ~ 42970005 (+)
G806244 NA non-coding downstream 85246 42970513 ~ 42970739 (+)
G806245 NA non-coding downstream 85556 42970823 ~ 42971089 (+)
G806246 NA non-coding downstream 86986 42972253 ~ 42972528 (+)
G805600 NA other upstream 535899 42346176 ~ 42348786 (+)
G805451 NA other upstream 552247 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 860282 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1449262 41423598 ~ 41452922 (+)
G803728 NA other upstream 1863183 41020936 ~ 41021502 (+)
G807677 NA other downstream 1310448 44195715 ~ 44196041 (+)
G807841 NA other downstream 1557395 44442662 ~ 44453077 (+)
G809685 NA other downstream 3249464 46134731 ~ 46135732 (+)
G812143 NA other downstream 5096734 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5660187 48545454 ~ 48570593 (+)

Expression


Co-expression Network