XLOC_027140 (wnt16)


Basic Information

Item Value
gene id XLOC_027140
gene name wnt16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10706755 ~ 10713584 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053480
GAGTTTGCGCTCATGGCGAAGGTGACTTGCTGGTGGTTGGACGTTACCTGCGTCTTGATGGATTCTTAAAACGGAGACTTAAAAGCGTCGTTTGTGGATTACAGGTGCTACATATTAGATGCAGTGGACCGGCATGAATCGTCTTTGTCAAAACGTTCAGTTCGGGACTTGTTAAATGAAGTGGACATGGATAATACCGGTTGTGGGATACATGCAGTTCATCATTTATTCCTTATATGGCTCTCCGTTTACCCTTTGTGCTCTCAGGGAAGTTGGATGCCGACAGGAGAGGAGAACCGCTTCTGATCTTTGTGTCACACTGCTCCGCATCACAGGTGGTTGGGCATCACATCTGTAGGAGTGCCCGAGAAGTTGGGTTGCGCGCATTTGCCCCTGTCGCACAAGCAGAAGGAGCTGTGCGCGCGCAAACCGCATCTTCTACCGAGCGTTAAAGAGGGCGCGCGCCTGGGCATCACCGAGTGCCAAACTCAGTTCAGACACGAACGCTGGAACTGCTCGACCCGACGGGACCCGAACGTGTTCGGCTACGAGCTCACGAGCGggactAAAGAGACAGCGTTCATCCATGCAGTAATGGCTGCCGGCCTGGTTCATGCAGTCACCCGCTCTTGCAGTGCAGGAAATATGACAGAGTGTTCATGTGACACAAGCCTGTTGGGCAGCGGGTCGCCCACCGAGGGCTGGCATTGGGGCGGCTGCTCTGATGACATCGCCTTCGGGACTTCATTCAGCCGCCGCTTTATTGACAGTGCAGCGAAAAACACCTCGACCCGTGGTGAGGAGGCCCTGCTCATTATGAAGCAGCATAACAGTGAGGCTGGGAGACAGGCGGTGGCCAAAACAATGTTGACAGACTGCCGCTGTCATGGCGTATCGGGTTCATGTGCGGTAAAGACGTGTTGGCGCACAATGGCTGCATTTGAGCGTGTGGGCGCCTACCTGAAGGATCGCTATGAAACCAGCGTTCATGTTGTGGACCGTTCCAAACGTAAGGTGCGACGCAAGGATAAAGAGCAACGCCATGTGCCTATCACCAAAGATGAGTTAATCTTCTTCAACAAATCGCCCAATTATTGCTTGGAGGACCGGCGGCTGGGCGTGACGGGGACCAGGGGCCGCAAGTGTAACAGAACTTCGGCCGGGCCCGACGGCTGCAACCTGCTGTGCTGCGGACGGGGATACAACACACATGTGGTGCGACATGTAGAGCGCTGCGAGTGTAAGTTCGTCTGGTGCTGTTATGTTCGCTGCAGACGCTGCGAGACAATGAATGACATGCACACCTGCAAGTAAAGCAGCGACTTCGGGCGAGGTTGAAGGATCTCGTGAGAGGAAATGGACCTTCTTTGTGCTGTCAGCCTATACAAACAAGCATGTTGACGAAATATCCAACCGGCAATACGTAGCTGAATCCATAAAGAAATGGTATAATCCTTTTTTAAGTACACATGCATAACTCTTCCCATGGGTTTCCATTGGGAGTCAAGCCATTTTGTATATAATGACTGTGGAATAAACTGGAGCATAAAGGGAATTCAAATACTGGGAATTGCAGAGGAAAAGTGTAAATACTTTAGATAACTCTGTTTGGATTTTTTACTGAAGGCATGTTCGGATAAAGAGTTAGCTGACCTTAAAATGAAAAGTTTGTCAAAATTAGTCTTTCCAACTCACCTCTTCACTTTTTCCCAACCCAAATcttcattaaaaaattattaaaagtaggATCACTCAAACATTTcgtaaataaaaactattattcaATTCAGTCATTATTCAATTAAAGTTCCGAGCAGTTcctattatttaattaaagttccaagcagctttacaaaaggtgttcATCATTAaattacagtcaaaatcagaaaatATAAACCGCTTAAAGGTgagtgacagaattttcatttgatGGCAAACTAACCCTACAACGATCAATTCTAGTGGGAATTGTGTTGATAATATGCCAAGatatttttgatataatgttttataGGTTCCAAATAAGAAATCATTGAATAAATAATACCCAAAGAA
>TCONS_00053481
AGACTTAAAAGCGTCGTTTGTGGATTACAGGTGCTACATATTAGATGCAGTGGACCGGCATGAATCGTCTTTGTCAAAACGTTCAGTTCGGGACTTGTTAAATGAAGTGGACATGGATAATACCGGTTGTGGGATACATGCAGTTCATCATTTATTCCTTATATGGCTCTCCGTTTACCCTTTGTGCTCTCAGGGAAGTTGGATGTGGTTGGGCATCACATCTGTAGGAGTGCCCGAGAAGTTGGGTTGCGCGCATTTGCCCCTGTCGCACAAGCAGAAGGAGCTGTGCGCGCGCAAACCGCATCTTCTACCGAGCGTTAAAGAGGGCGCGCGCCTGGGCATCACCGAGTGCCAAACTCAGTTCAGACACGAACGCTGGAACTGCTCGACCCGACGGGACCCGAACGTGTTCGGCTACGAGCTCACGAGCGggactAAAGAGACAGCGTTCATCCATGCAGTAATGGCTGCCGGCCTGGTTCATGCAGTCACCCGCTCTTGCAGTGCAGGAAATATGACAGAGTGTTCATGTGACACAAGCCTGTTGGGCAGCGGGTCGCCCACCGAGGGCTGGCATTGGGGCGGCTGCTCTGATGACATCGCCTTCGGGACTTCATTCAGCCGCCGCTTTATTGACAGTGCAGCGAAAAACACCTCGACCCGTGGTGAGGAGGCCCTGCTCATTATGAAGCAGCATAACAGTGAGGCTGGGAGACAGGCGGTGGCCAAAACAATGTTGACAGACTGCCGCTGTCATGGCGTATCGGGTTCATGTGCGGTAAAGACGTGTTGGCGCACAATGGCTGCATTTGAGCGTGTGGGCGCCTACCTGAAGGATCGCTATGAAACCAGCGTTCATGTTGTGGACCGTTCCAAACGTAAGGTGCGACGCAAGGATAAAGAGCAACGCCATGTGCCTATCACCAAAGATGAGTTAATCTTCTTCAACAAATCGCCCAATTATTGCTTGGAGGACCGGCGGCTGGGCGTGACGGGGACCAGGGGCCGCAAGTGTAACAGAACTTCGGCCGGGCCCGACGGCTGCAACCTGCTGTGCTGCGGACGGGGATACAACACACATGTGGTGCGACATGTAGAGCGCTGCGAGTGTAAGTTCGTCTGGTGCTGTTATGTTCGCTGCAGACGCTGCGAGACAATGAATGACATGCACACCTGCAAGTAA

Function

symbol description
wnt16 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including embryonic skeletal joint development; hematopoietic stem cell differentiation; and regulation of hematopoietic stem cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; myotome; neural tube; otic vesicle; and somite. Orthologous to human WNT16 (Wnt family member 16).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0072498 embryonic skeletal joint development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04150 mTOR signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko04916 Melanogenesis
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05205 Proteoglycans in cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05217 Basal cell carcinoma
ko05224 Breast cancer
ko05165 Human papillomavirus infection
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04934 Cushing syndrome
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-040426-2330 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including embryonic skeletal joint development; hematopoietic stem cell differentiation; and regulation of hematopoietic stem cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; myotome; neural tube; otic vesicle; and somite. Orthologous to human WNT16 (Wnt family member 16).

Ensembl:

ensembl_id ENSDARG00000094973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053480 False 2058 nonsense_mediated_decay 0.47 4 10706755 10713584
TCONS_00053481 True 1183 mRNA 0.54 4 10706829 10712840

Neighbor

gene id symbol gene type direction distance location
XLOC_027139 cped1 coding upstream 2170 10616626 ~ 10704585 (+)
XLOC_027138 ing3 coding upstream 91400 10604110 ~ 10615355 (+)
XLOC_027137 kcnd2 coding upstream 144581 10365857 ~ 10562174 (+)
XLOC_027136 flncb coding upstream 576406 10066840 ~ 10130349 (+)
XLOC_027135 NA coding upstream 645307 10058101 ~ 10061448 (+)
XLOC_027141 NA coding downstream 1161 10714745 ~ 10715592 (+)
XLOC_027142 stab2 coding downstream 8211 10721795 ~ 10763547 (+)
XLOC_027143 NA coding downstream 50693 10764277 ~ 10791239 (+)
XLOC_027144 NA coding downstream 102546 10816130 ~ 10826992 (+)
XLOC_027145 syt10 coding downstream 175178 10888762 ~ 10909086 (+)
XLOC_027131 NA non-coding upstream 817658 9867910 ~ 9889097 (+)
XLOC_027129 NA non-coding upstream 976083 9726795 ~ 9730672 (+)
XLOC_027126 NA non-coding upstream 1072051 9623291 ~ 9634704 (+)
XLOC_027116 NA non-coding upstream 1354123 9346919 ~ 9352632 (+)
XLOC_027149 BX784029.3 non-coding downstream 489357 11202941 ~ 11238022 (+)
XLOC_027150 BX649349.1 non-coding downstream 572345 11285929 ~ 11289783 (+)

Expression


Co-expression Network