G806458 (LOC100846954)


Basic Information

Item Value
gene id G806458
gene name LOC100846954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43320051 ~ 43322678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU917670
tgtgttttgggtcattgtcatgctgaaatacccatccacgacccattcccaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgaaatTGTCCTGTCCcattagcagaaaaacacccccaaagcataatgtttccacctccatgtttgagggtggggatggtgttcttggggtcataggtaGCATTCCTCCtcttccaaacacggcGAGCAGCAGAAAAACATGTGGAATCATTAATCCGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU917670 True 288 lncRNA 0.50 2 43320051 43322678

Neighbor

gene id symbol gene type direction distance location
taf10 LOC106572212 coding upstream 32072 43285841 ~ 43287979 (+)
LOC110531181 LOC106572211 coding upstream 45045 43265517 ~ 43275006 (+)
LOC110532149 LOC106572217 coding upstream 357023 42935264 ~ 42963028 (+)
LOC110532148 LOC106572218 coding upstream 389061 42912383 ~ 42930990 (+)
LOC110532147 LOC106572219 coding upstream 408364 42903096 ~ 42911687 (+)
ybx1 LOC106572208 coding downstream 6690 43329368 ~ 43335690 (+)
acot7 acot7 coding downstream 186300 43508978 ~ 43579823 (+)
LOC110531183 gpr153 coding downstream 268827 43591505 ~ 43647450 (+)
LOC118966053 NA coding downstream 344134 43666812 ~ 43690641 (+)
wrap73 wrap73 coding downstream 420790 43743468 ~ 43764862 (+)
G806407 NA non-coding upstream 79428 43240263 ~ 43240623 (+)
G806406 NA non-coding upstream 80227 43239616 ~ 43239824 (+)
G806405 NA non-coding upstream 81132 43238702 ~ 43238919 (+)
G806404 NA non-coding upstream 81365 43237853 ~ 43238686 (+)
G806403 LOC106572213 non-coding upstream 83535 43232869 ~ 43236516 (+)
G806470 NA non-coding downstream 40986 43363664 ~ 43364473 (+)
G806510 NA non-coding downstream 112982 43435660 ~ 43435872 (+)
G806513 NA non-coding downstream 118480 43441158 ~ 43441383 (+)
G806884 NA non-coding downstream 166199 43488877 ~ 43489132 (+)
G806890 NA non-coding downstream 170639 43493317 ~ 43493848 (+)
G805600 NA other upstream 971265 42346176 ~ 42348786 (+)
G805451 NA other upstream 987613 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 1295648 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 1884628 41423598 ~ 41452922 (+)
G803728 NA other upstream 2298549 41020936 ~ 41021502 (+)
G807677 NA other downstream 873037 44195715 ~ 44196041 (+)
G807841 NA other downstream 1119984 44442662 ~ 44453077 (+)
G809685 NA other downstream 2812053 46134731 ~ 46135732 (+)
G812143 NA other downstream 4659323 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 5222776 48545454 ~ 48570593 (+)

Expression


Co-expression Network