G806724 (LOC106572208)


Basic Information

Item Value
gene id G806724
gene name LOC106572208
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43331930 ~ 43339589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU917956
GCGAGGTGCGTTGGTGTACGGGGGCCGACGGCCGTAGCGTCTACGTACAAAGTATGGGGGGTAGCGCCGTCTCCCGGGGAAGGGGGGCCTGCGCTGCTGGGGCTGCATCTCTCCTTCTGGGGCACTCTCAGCACTCTCGCGGCTCTTGCGGGGTGGGCGCTCTCCTTCACCCTCGCCGTCACTCTGGTAGTTGTCCGGGTATTCGCCGTCACGGGCTGGGCCCCTCCTGCGGGGGTACCGCCTGTAGCGGTTCCGGTCAGCTGCATACTTGCTCCCCTGGACTGGGACACCCGCTGGGCCGGTCACATTGGCTGCCTCTGCTCCCTTCTCCCCCTCAACCACATCAAACTCCACAGTTTCGCCATCTCCAACACTGCGAAGGTATTTC
>TU917957
tcttttcatagtctccagaacaaattcaagaaaatgtacagtattatatagagcccttattgcatggaacttcccaTCTcgtattgctcaaataaacagcaaacctggtttcaaaaaactgataaagcaacacctcgtggCACAGCGCCTCTGCCCTATTTGACCTAGACAGtttgtatgcattgatatgtaggctacgtgtgctataattacatttttaaaaattatgtaGTTTTGTCCTTGCTGTTTTTGTCTAATGATAATCtgtattatgttttgtgtggaccccaggaagagtagctgctacttatgcaacagctaatggggatcctaataaaataccaacctgacggagcttgaggatctgcagaaaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcattcaAGAAGACTCGAGGGTGTAATCgtcaccaaagTATGGGGGGTAGCGCCGTCTCCCGGGGAAGGGGGGCCTGCGCTGCTGGGGCTGCATCTCTCCTTCTGGGGCACTCTCAGCACTCTCGCGGCTCTTGCGGGGTGGGCGCTCTCCTTCACCCTCGCCGTCACTCTGGTAGTTGTCCGGGTATTCGCCGTCACGGGCTGGGCCCCTCCTGCGGGGGTACCGCCTGTAGCGGTTCCGGTCAGCTGCATACTTGCTCCCCTGGACTGGGACACCCGCTGGGCCGGTCACATTGGCTGCCTCTGCTCCCTactttaaacATTCCCAAAATACATTAAGGCATATTAATGTATATGAGCCTGCAACTACCTTCTCCCCCTCAACCACATCAAACTCCACAGTTTCGCCATCTCCAACACTGCGAAGGTATTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU917956 False 388 TUCP 0.65 2 43331930 43332703
TU917957 True 850 lncRNA 0.49 3 43331930 43339589

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-100a1.6 gpr160 coding downstream 20812 43306747 ~ 43311118 (-)
zgc:154075 pht4 coding downstream 45757 43275003 ~ 43286173 (-)
LOC110532154 LOC106572213 coding downstream 90710 43233130 ~ 43241220 (-)
LOC110532152 LOC106572214 coding downstream 132976 43131367 ~ 43198954 (-)
LOC110532151 kcnab2 coding downstream 251893 42975221 ~ 43080037 (-)
espn LOC106572206 coding upstream 33151 43372740 ~ 43472596 (-)
her3 hes3 coding upstream 316491 43656080 ~ 43657506 (-)
LOC110531185 tas1r1 coding upstream 329295 43668884 ~ 43673687 (-)
rer1 rer1 coding upstream 337150 43676739 ~ 43696699 (-)
tp73 tp73 coding upstream 364434 43704023 ~ 43751545 (-)
G806752 NA non-coding downstream 84869 43246840 ~ 43247061 (-)
G806751 NA non-coding downstream 85169 43246445 ~ 43246761 (-)
G806749 NA non-coding downstream 88243 43243420 ~ 43243687 (-)
G806747 NA non-coding downstream 91278 43240348 ~ 43240652 (-)
G806746 NA non-coding downstream 95399 43236259 ~ 43236531 (-)
G806880 NA non-coding upstream 145552 43485141 ~ 43485523 (-)
G806892 NA non-coding upstream 153932 43493521 ~ 43493943 (-)
G807297 acot7 non-coding upstream 219831 43559420 ~ 43579810 (-)
G807360 NA non-coding upstream 245227 43584816 ~ 43585025 (-)
G807361 NA non-coding upstream 245558 43585147 ~ 43585454 (-)
LOC110532119 LOC106572245 other downstream 1192604 42125255 ~ 42141613 (-)
G804543 LOC106572259 other downstream 1893959 41437030 ~ 41437971 (-)
G804255 NA other downstream 2346685 40984482 ~ 40985245 (-)
wdr6 wdr6 other downstream 2415956 40904738 ~ 40916073 (-)
G804307 NA other downstream 2419572 40862589 ~ 40912358 (-)
prdm16 prdm16 other upstream 600977 43781726 ~ 44015554 (-)
tafa5l LOC106572193 other upstream 909209 44247091 ~ 44292397 (-)
G807941 NA other upstream 1021827 44361416 ~ 44362166 (-)
G808375 NA other upstream 1294970 44634559 ~ 44636846 (-)
G809071 LOC106572179 other upstream 1956267 45295856 ~ 45298740 (-)
arhgef16 arhgef16 coding upstream 3054 43335757 ~ 43370628 (-)

Expression


Co-expression Network