XLOC_027141


Basic Information

Item Value
gene id XLOC_027141
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 10714745 ~ 10715592 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057628
ATCTGTTCTCTCAGACTTAGCCAAAAACTCAGGTTTGGTTCCGCTATCCCTAATGAGCTGCAACTGTGTTTCTTGTGGTTTGGTAAGGAAAAAAAAGCAACTCGACAACTGttaaaacaaagacaaatatttCCGCAGATGAAATTCAATCGCATAATGAATGGAAGAATATATTTATACTTAACTGTGATCATTCCATTTTTTTTACTCAGTTTGCTTAACCCAGGACGTTTTTTTAAAGCTGTTCCATGCAATGTTTTACATTCCTTTAATCAAAGCTAGATCTTTTTTCCTTCGACTACAATGTGTTCAATTTTTTAGTGTGTGCACTGTCAAGTCAAAACTGAATGCATCGCAGTGGGTGGTGCGACCACATGCACAATACACTACGTGAAGTTTCATAAATTTATTTCGAgtggagcatgtgatatgattgagcacgactggctgctcctctgtaatcagtaataatccaatcagagtgatcctagtttACAATAAATGGATCGTTTTCTCCCTACCGCTCTATCTAGGCTTTGgaagaatctccccttccaccccatctcctccttttttctCCCTTTTCCAAGGGGGGATCTTGAGACCTACCTTATCTCAGacccccttatatgcttattgaccgggcaggagccttgggctcaagtatctccaagctcagggttctctcccgggacagcatgccaaacctgctataaat

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057628 True 718 lncRNA 0.41 2 10714745 10715592

Neighbor

gene id symbol gene type direction distance location
XLOC_027140 wnt16 coding upstream 1161 10706755 ~ 10713584 (+)
XLOC_027139 cped1 coding upstream 10160 10616626 ~ 10704585 (+)
XLOC_027138 ing3 coding upstream 99390 10604110 ~ 10615355 (+)
XLOC_027137 kcnd2 coding upstream 152571 10365857 ~ 10562174 (+)
XLOC_027136 flncb coding upstream 584396 10066840 ~ 10130349 (+)
XLOC_027142 stab2 coding downstream 6203 10721795 ~ 10763547 (+)
XLOC_027143 NA coding downstream 48685 10764277 ~ 10791239 (+)
XLOC_027144 NA coding downstream 100538 10816130 ~ 10826992 (+)
XLOC_027145 syt10 coding downstream 173170 10888762 ~ 10909086 (+)
XLOC_027146 ccdc59 coding downstream 337709 11053301 ~ 11055737 (+)
XLOC_027135 NA non-coding upstream 653297 10058101 ~ 10061448 (+)
XLOC_027131 NA non-coding upstream 825648 9867910 ~ 9889097 (+)
XLOC_027129 NA non-coding upstream 984073 9726795 ~ 9730672 (+)
XLOC_027126 NA non-coding upstream 1080041 9623291 ~ 9634704 (+)
XLOC_027116 NA non-coding upstream 1362113 9346919 ~ 9352632 (+)
XLOC_027149 BX784029.3 non-coding downstream 487349 11202941 ~ 11238022 (+)
XLOC_027150 BX649349.1 non-coding downstream 570337 11285929 ~ 11289783 (+)
XLOC_027157 BX465862.5 non-coding downstream 850448 11566040 ~ 11566156 (+)

Expression


Co-expression Network