G806959


Basic Information

Item Value
gene id G806959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43650991 ~ 43652425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU918212
atttcatcgttttgatgtcttccctattattctacaatgtagaaaatagtaaaaaataaagaaaaactcgaATACTTGAATaagtatgtgtccaaacttttgactgattctgttatgtatatatttgtacctttattttatcaggaaGTCATACTGacaccaaggtctcttttacagatgagccatGAATTACATACATTATAGAAaatacacaaatcaaaatataaatacaagcagaaataaataaataaaaacacattcatcagtaataagcaATAAGGATATTTGTCAAATCCGTCATGATTAATGTATTGTAACAGGCACACGATGTGATTACTAAAGTCcgatttttatatttttgactgttTTCGTTGTATAACAGTTAGGCTAGTtgtcccttttcaggtttagaagtgACTACTAATCGCTAAATGGTATTCCTATAAACTGATAGCATAGCTAAATTAGCATACAGAAATCGGTGACATTAGTCAAAGTCGTTTTTAAGCAGTTGATTTATGATGATGACTTGATGGACAtgtattggggttgacatccatacaagcattatactCCGATGTTTACCCCcaacatagtgtgaaatacacatataaacaatagcctaaatgtaggcaaatgttgttgttggacaatGAGGAGATTAGGGATCTTTCCCCCACTCGTTTCCATGGTATTCCCATTGTTTTGGTCGAGTTCAATTGACCTCAGaaactggtacccaggctagataAATGCACCTATAaggtataatgtgtgtgtgcctCATAGAAAGTGTGCTATTATCATAATACTTTGCTTACAAATGTTTTGCATACACTTTAAGCTAATTTGTAGCATAAATCATGCTCCCAAAGTCCAGGTTATTAATTTAGGTTAGCCTGTTAATTGTGCACCTCTCACCCCTTGTTCAATATTCAAATGAATATCATAATGTGAACACCTTTCTTTGAAAGTATTGCCGTCTTTATATTCCCTTTTCGAAATATGCCACGTCATTGACTTTTTCTGCATtatgtttttctctgtgtttacAGTAGCCTACCTATTTATCAGAATCTAATTTTGTAACATATCCTGCTCTGTTAAAGCTTTTATGACTGTCAATCCTATGAACAATATTTGGTGTTTTTGTTGCTCAGATGATGGTTTTGTTAAAAGGATAAAGATCTATTTCGAATCAAAGTTGCAGTGGGAAAAAAACACTTTATTAGTTTGAAATCGTTGAAAGTGTGTTTTGCGtttgtattttgaattgtttttttgtttttgtttttttccgtGAGGTGCACATCAACCATATTAGAGTTTGATTCACAACTCGGTTTTATTGAATTGATGTTCACACTTCTTTGAGATAATTCGAGATATTATTCTGTAAGGACCAGAAAAAAATAAAGCAGATGTTTCGACATAT
>TU918207
tagtaaaaaataaagaaaaactcgaATACTTGAATaagtatgtgtccaaacttttgactgattctgttatgtatatatttgtacctttattttatcaggaaGTCATACTGacaccaaggtctcttttacagatgagccatGAATTACATACATTATAGAAaatacacaaatcaaaatataaatacaagcagaaataaataaataaaaacacattcatcagtaataagcaATAAGGATATTTGTCAAATCCGTCATGATTAATGTATTGTAACAGGCACACGATGTGATTACTAAAGTCcgatttttatatttttgactgttTTCGTTGTATAACAGTTAGGCTAGTtgtcccttttcaggtttagaagtgACTACTAATCGCTAAATGGTATTCCTATAAACTGATAGCATAGCTAAATTAGCATACAGAAATCGGTGACATTAGTCAAAGTCGTTTTTAAGCAGTTGATTTATGATGATGACTTGATGGACAtgtattggggttgacatccatacaagcattatactCCGATGTTTACCCCcaacatagtgtgaaatacacatataaacaatagcctaaatgtaggcaaatgttgttgttggacaatGAGGAGATTAGGGATCTTTCCCCCACTCGTTTCCATGGTATTCCCATTGTTTTGGTCGAGTTCAATTGACCTCAGaaactggtacccaggctagataAATGCACCTATAaggtataatgtgtgtgtgcctCATAGAAAGTGTGCTATTATCATAATACTTTGCTTACAAATGTTTTGCATACACTTTAAGCTAATTTGTAGCATAAATCATGCTCCCAAAGTCCAGGTTATTAATTTAGGTTAGCCTGTTAATTGTGCACCTCTCACCCCTTGTTCAATATTCAAATGAATATCATAATGTGAACACCTTTCTTTGAAAGTATTGCCGTCTTTATATTCCCTTTTCGAAATATGCCACGTCATTGACTTTTTCTGCATtatgtttttctctgtgtttacAGTAGCCTACCTATTTATCAGAATCTAATTTTGTAACATATCCTGCTCTGTTAAAGCTTTTATGACTGTCAATCCTATGAACAATATTTGGTGTTTTTGTTGCTCAGATGATGGTTTTGTTAAAAGGATAAAGATCTATTTCGAATCAAAGTTGCAGTGGGAAAAAAACACTTTATTAGTTTGAAATCGTTGAAAGTGTGTTTTGCGtttgtattttgaattgtttttttgtttttgtttttttccgtGAGGTGCACATCAACCATATTAGAGTTTGATTCACAACTCGGTTTTATTGAATTGATGTTCACACTTCTTTGAGATAATTCGAGATATTATTCTGTAAGGACCAGAAAAAAATAAAGCAGATGTTTCGACATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU918212 False 1435 lncRNA 0.33 1 43650991 43652425
TU918207 True 1389 lncRNA 0.33 1 43651037 43652425

Neighbor

gene id symbol gene type direction distance location
LOC110531183 gpr153 coding upstream 3541 43591505 ~ 43647450 (+)
acot7 acot7 coding upstream 71168 43508978 ~ 43579823 (+)
ybx1 LOC106572208 coding upstream 315301 43329368 ~ 43335690 (+)
ppih ppih coding upstream 327182 43288149 ~ 43323809 (+)
taf10 LOC106572212 coding upstream 363012 43285841 ~ 43287979 (+)
LOC118966053 NA coding downstream 14387 43666812 ~ 43690641 (+)
wrap73 wrap73 coding downstream 91043 43743468 ~ 43764862 (+)
LOC110533015 NA coding downstream 381891 44034316 ~ 44034840 (+)
LOC110532176 LOC106572191 coding downstream 772589 44425014 ~ 44429101 (+)
agrn LOC106572186 coding downstream 858628 44511053 ~ 44790843 (+)
G806958 NA non-coding upstream 59712 43591035 ~ 43591279 (+)
G806953 NA non-coding upstream 64460 43586261 ~ 43586531 (+)
G806917 NA non-coding upstream 119032 43530089 ~ 43531959 (+)
G806890 NA non-coding upstream 157143 43493317 ~ 43493848 (+)
G806884 NA non-coding upstream 161859 43488877 ~ 43489132 (+)
G807060 NA non-coding downstream 89401 43741826 ~ 43742063 (+)
G807061 NA non-coding downstream 90165 43742590 ~ 43742840 (+)
G807063 NA non-coding downstream 113019 43765444 ~ 43768155 (+)
G807137 NA non-coding downstream 206025 43858450 ~ 43858722 (+)
G805600 NA other upstream 1302205 42346176 ~ 42348786 (+)
G805451 NA other upstream 1318553 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 1626588 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 2215568 41423598 ~ 41452922 (+)
G803728 NA other upstream 2629489 41020936 ~ 41021502 (+)
G807677 NA other downstream 543290 44195715 ~ 44196041 (+)
G807841 NA other downstream 790237 44442662 ~ 44453077 (+)
G809685 NA other downstream 2482306 46134731 ~ 46135732 (+)
G812143 NA other downstream 4329576 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 4893029 48545454 ~ 48570593 (+)

Expression


Co-expression Network