G807838 (LOC106941359)


Basic Information

Item Value
gene id G807838
gene name LOC106941359
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44438484 ~ 44450953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU919187
CGAGACTACAGGAAGTAGGGAGCTCGACTGAACAGCTCCCGCTAATGATGGAGTTCTGTTTTCTTTTCTCTACTTGGACTGGAAGGTACCTGTCTCTTGGCCAATGAGGAGGAGTCCTGGAGCATGTCCATGATGATGGGGAAGAGCTCGTCCATCCACTTCCTCATCTCCAGCCCGCTCACctgagccaactctccaaTAGTGGCCAGGACACTGATGACCACTCCAGGGTTGGGGTCTGGGTCTTTAAGCTTCAGGATCAGGGCCTTTAGGATGGGCTCCATGTATGGGCGTATGAGGCGGGGGGCGTTGGAAACCAGGTGACCCAGCATGCGGGCACTCTGCTCCTTGTTCCTGCCCACGCCACTGTGCTCCAGCTCAGTCAGAATCTGGATGAGCATCTTGCGCAGGAAGGGCATGACGAAGGCGGGGTTCATGCTGCTGAGGCGTCCGATGGTGCAGATGGCCAGTTCCCTGATCTCAAACACCTCGTCGTTCAGCGCCACGAACAGAGCTTGCAGGTTCTCCGCCTGCGCCAGGTGGGCGTCGAAGCGCTCGTCCAGAGAGGCCAGCACACAGTAGCGGATATCTGGG
>TU919188
CGAGACTACAGGAAGTAGGGAGCTCGACTGAACAGCTCCCGCTAATGATGGAGTTCTGTTTTCTTTTCTCTACTTGGACTGGAAGGTACCTGTCTCTTGGCCAATGAGGAGGAGTCCTGGAGCATGTCCATGATGATGGGGAAGAGCTCGTCCATCCACTTCCTCATCTCCAGCCCGCTCACctgagccaactctccaaTAGTGGCCAGGACACTGATGACCACTCCAGGGTTGGGGTCTGGGTCTTTAAGCTTCAGGATCAGGGCCTGAAACAGAGTAAATGAGCTTAGAGCCAACAGTC

Function

NR:

description
PREDICTED: CUB and sushi domain-containing protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU919187 False 594 lncRNA 0.58 5 44438484 44450953
TU919188 True 301 lncRNA 0.52 3 44438484 44449656

Neighbor

gene id symbol gene type direction distance location
LOC110532176 LOC106572191 coding upstream 9383 44425014 ~ 44429101 (+)
LOC110533015 NA coding upstream 403644 44034316 ~ 44034840 (+)
wrap73 wrap73 coding upstream 673622 43743468 ~ 43764862 (+)
LOC118966053 NA coding upstream 747843 43666812 ~ 43690641 (+)
LOC110531183 gpr153 coding upstream 791034 43591505 ~ 43647450 (+)
agrn LOC106572186 coding downstream 60100 44511053 ~ 44790843 (+)
LOC110532179 LOC106572187 coding downstream 349057 44800010 ~ 44857914 (+)
LOC110532181 LOC106572185 coding downstream 462011 44912964 ~ 44959122 (+)
prex1 LOC106572294 coding downstream 508623 44959576 ~ 45073059 (+)
LOC110532183 LOC106572183 coding downstream 625611 45076564 ~ 45119186 (+)
G807712 NA non-coding upstream 131150 44244624 ~ 44307334 (+)
G807678 NA non-coding upstream 188728 44196610 ~ 44249756 (+)
G807680 mk13 non-coding upstream 236196 44199775 ~ 44202288 (+)
G807665 brpf3 non-coding upstream 246707 44191067 ~ 44191777 (+)
G807656 NA non-coding upstream 260321 44177933 ~ 44178163 (+)
G808005 NA non-coding downstream 36503 44487456 ~ 44487730 (+)
G808027 NA non-coding downstream 52498 44503451 ~ 44503914 (+)
G808032 NA non-coding downstream 56295 44507248 ~ 44507477 (+)
G808145 NA non-coding downstream 330541 44781494 ~ 44782421 (+)
G808184 NA non-coding downstream 422439 44873392 ~ 44873630 (+)
G807677 NA other upstream 242443 44195715 ~ 44196041 (+)
G805600 NA other upstream 2089698 42346176 ~ 42348786 (+)
G805451 NA other upstream 2106046 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 2414081 42021496 ~ 42027071 (+)
LOC110532096 LOC106572259 other upstream 3003061 41423598 ~ 41452922 (+)
G809685 NA other downstream 1683778 46134731 ~ 46135732 (+)
G812143 NA other downstream 3531048 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 4094501 48545454 ~ 48570593 (+)
G813071 NA other downstream 4508796 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 4552366 48962187 ~ 49006710 (+)

Expression


Co-expression Network