G808623


Basic Information

Item Value
gene id G808623
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45070914 ~ 45073040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU920061
TTTTACTAGCTTGTTAAAGTTCAATTTACAAATGGTATTTTTAGAAAGAAATATTCAAAAACGTATTTGTACAATTATTTTCAGGCAACATAAAATTGCAAATAAAGTATGTACAGCGATGAGAAATTAAAACAAGTAAATGTTACATTTCTATCAATAGGTGACCTGGTAAGAGTGGAACAATTTATCAATTGATCACTTAATGACAGCTATGCCAACACCAGAGGCTGCAAAGAGAATTTAAACCTGGGTGTGTTCGGAAAAcatacaaaaataaatgttttgcaacagaaaacaaaagtAAGCATTTCgaattggacaagtccaggtagtcccttcctgttttacttttttttttttcttcaacatTGGGTGCCACATTTTTTAcacatttggtgcctaatgaacatgaccctcaACTGGGACCTGACAAGAGCTTCTAAATAAATAACAAGGACTGAGCAACTAGTCAGAGTGCAGCATCTAGACACAGATACAAACCAAGCTAAAAACGAAAGTGGAGCCATTTTAACGGTCAACAACGTCGTCAGTGTGGATATATACCTCGACACCAAAATCCGTCCCTGTCCAAATGTACAATATGAATACCCCCAAAAGTTCAAACATTTTACATACTATATTATGTCCATAAAAATAATCACATTTAAATTATAGCATTAACTCTGCTGCCAATGGCATAGATATAGACCATATTCTATTTTCTCTGACAGAGACATTGGTTACAGTAAGTATATACAAGAAATATAACATCTTCAATAAAATAATGCTACTGTTTATCAAGAGTTAACTTCACTGATCCCTTTGTTGTCATCATCCTCGGGACAGTTTACAGTACTTTGTGCTAACACTTCAGAGTAATTAGATGAATCCGTGTGCTCATTTAAATATCGAAACATTAAAATCAAATCGCAAAGAGGTCTTGTGAGTTGGCTGGGTCAACAGGAGGCAATCTCCCACTATTAATATTACTGAATATATATTAATACTTTAAAAGGCTTAAAAAATGCCAACCTGTTGACTCGGGATTAGATAAAGTTAGCTTGTTTCCCCGACTCAGATTAAAACTCCCCTTCCTATTCATTTTTAACAAAACTCCCTGCATTTTAACACTTGTCAACACATCAAACTCCCGAGGAAATAACAAAGACAAAatcaaaacataaaaaaatagataaggagtttaaaaaaaaatcaaaacatgGCATGCCATTGCTCCATTAAATACTGCATGATGCGTAGGCTGGAATGCTTTCAATTCTTGAATACCTGATATTATTGAGTAATACAATAAATCACTATGCGTCATAGTGCAGTAATACAGTACTCACACTAGCCTACAGTAATTGCACATTCGCCGCATGCAAGGGGGGCTAAGGCAAAGGGCAGCCCATtaccatccatctttccatccaTCCCTATCATttcacccttctctcctccttgATGCAGTGCCTTCTGTTCCTAGCTGCAATACCAGACATGCTGTCTGACGAAGATACCACACACTGGCGTTGCAGTCCAAGGCAAAGTGGATAAAGAAGAATGTCTGCTACAAGCGGTTTTTGCGTTAATCCAGTTGATAATAGCCCGGTGTGAGCATTGTCGTGGTGGCGGACATATTTTTGTTAGGTCATGTCTTGTCTGATGTCACCATTCCCACACTCCTCTCTAGATTCCCAGCAATGAATTACCAGGTTAGTGACGGGTTGCCAGGTCAGTGACAGCAGTCTCATgtcacagaggggggggctatacaGGACACCACGGACCCTGTGGGATCCAGACACTTGATGTTCCTGTGCTGGAATGTTCCATTCGGGGACATGGTTGGGGGGGGTACCACACTTGTGTCTATGACTcctggatgggagaggagagcagagagctccctgttctccctcctcccccattcTACCTTACCCATTCATCCATGATCTCTAGTCACCGAGGCTTCAGTATATCGCTAATACAAAATAAATTGCTCTACTAGGAATAAAAACACAGCACCCCTTTCTTTTATAGATCTCCGTCTTGGGGTGGTAGACACAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU920061 True 2072 lncRNA 0.39 3 45070914 45073040

Neighbor

gene id symbol gene type direction distance location
LOC110532180 LOC106572190 coding downstream 200623 44863031 ~ 44870291 (-)
mtor mtor coding downstream 613955 44333485 ~ 44456959 (-)
LOC110532177 LOC106572192 coding downstream 626905 44442368 ~ 44444009 (-)
tafa5l LOC106572193 coding downstream 778517 44247091 ~ 44292397 (-)
mapk13 mk13 coding downstream 864449 44196588 ~ 44249763 (-)
LOC100136637 LOC100329213 coding upstream 149639 45222679 ~ 45224379 (-)
rtel1 rtel1 coding upstream 152165 45225205 ~ 45281464 (-)
pdyn pdyn coding upstream 243524 45316564 ~ 45318766 (-)
LOC110532194 LOC106572173 coding upstream 424851 45497891 ~ 45513979 (-)
LOC110532196 dennd2d coding upstream 473553 45546593 ~ 45580976 (-)
G808601 LOC106572185 non-coding downstream 118235 44952010 ~ 44952679 (-)
G808558 NA non-coding downstream 170625 44899975 ~ 44900289 (-)
G808550 NA non-coding downstream 193063 44877537 ~ 44877851 (-)
G808549 NA non-coding downstream 194131 44876584 ~ 44876783 (-)
G808538 NA non-coding downstream 210479 44858300 ~ 44860435 (-)
G808664 NA non-coding upstream 26135 45099175 ~ 45100363 (-)
G808707 NA non-coding upstream 77560 45150600 ~ 45150829 (-)
G808723 NA non-coding upstream 87791 45160831 ~ 45161055 (-)
G808725 NA non-coding upstream 88882 45161922 ~ 45162313 (-)
G808728 NA non-coding upstream 90745 45163785 ~ 45163986 (-)
G808375 NA other downstream 434068 44634559 ~ 44636846 (-)
G807941 NA other downstream 708748 44361416 ~ 44362166 (-)
prdm16 prdm16 other downstream 1055458 43781726 ~ 44015554 (-)
G806724 LOC106572208 other downstream 1738211 43331930 ~ 43339589 (-)
G809071 LOC106572179 other upstream 222816 45295856 ~ 45298740 (-)
zmynd12 zmynd12 other upstream 1114224 46187156 ~ 46200250 (-)
G810563 NA other upstream 1180474 46253514 ~ 46256922 (-)
G811300 NA other upstream 2105764 47178804 ~ 47181797 (-)

Expression


Co-expression Network