G808783 (rtel1)


Basic Information

Item Value
gene id G808783
gene name rtel1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45227441 ~ 45237572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU920247
CTCTATCCAGTCTCTTGACATGTCTGGAAAATACAGTGTTACTAAATGCATCCTAGTGGTCAGTGTCAGAAACTAGGAATTGACTGCACACCCCCGTTCTGCATCAGCGTTTCTTTCTCCTCCTTTGAGAGAGAGTGATCGGGTTTGTAGCCACAGCCCTGGCCAGTCAGCTCCACACACTTCTCATCAAATCTCTTCTTGTGGTGGGGTCGTATGAACTGGTAGAATCctcggagCAGGTTGTGAGTGTTGGTGTCCCCGGTGAAGAGGTCGGCTGCCTCGGCCAGCAGTTCGTCAAGGTCATCCATCTGTTTGTACGTCTGCAGGGCCACCATGATTCGCTGGAAATTCACCTGACTCAGCGACCTTTTCATTTCCGCCAGGAACGACTTGGCTTTCCCCGCTTTGCCCTCCTCTGACACATTAGGAGACAGAGGGATTTTCCGTTCTTGGACCACTTTGATTTTTCGTTTTCCACCACGCAATTCGTCATCCACGCGCTTGTCGTACTGAAGAGACAGCGTGGATATGCGATTAGCCTAAACAGAATGGAACCGTTAGCATCAGCAGCAGTTTTATTCAGTACTACATTTATTCTAAAACATACACTTTTGCTATGAT
>TU920249
gggttggactcATTACATTTCTGTGATGTCGGACCTTCAGCTCACCGGGCTTGGTTAAGACCAGCCTCATTTTCAGGCCCGATGAGAACTCTAGGTTGGACAAGCCTAAATGACAGCCATCGTTGTCATCCGGGGTCAATGTATGCAAGAGGGGTGCGACTTCAAGCGATGCGACTTCTGATTGCTAGTTATTTTTTCCCTATGCTTCAATCATGCCCTCCCCCACTCCTGGACaggctgtgcacacacacacacacacacacacacacacacacacgcgtcagGCACATGCAGCAAATGTTTTCCTTTAACATTAGAATGTACCATTGAGTAGGATCCATTTTCTCTAGCTGAGTCAGAGTGACCTGATGACTCCGATGAGCCCAGCAGTGAACACACAAGGCCGAGATCCATTACTATACAAGCTGAacccacaagcacacacacacctcggagCAGGTTGTGAGTGTTGGTGTCCCCGGTGAAGAGGTCGGCTGCCTCGGCCAGCAGTTCGTCAAGGTCATCCATCTGTTTGTACGTCTGCAGGGCCACCATGATTCGCTGGAAATTCACCTGACTCAGCGACCTTTTCATTTCCGCCAGGAACGACTTGGCTTTCCCCGCTTTGCCCTCCTCTGACACATTAGGAGACAGAGGGATTTTCCGTTCTTGGACCACTTTGATTTTTCGTTTTCCACCACGCAATTCGTCATCCACGCGCTTGTCGTACTGAAGAGACAGCGTGGATATGCGATTAGCCCTCTCCTCGCCCCCTAGGGCCTCGTCTTCATCTCCATAACGGCAGTCGCTGTGCTCCAGGGCGTCTAGCAGGCCGGCCGGCCTCCTCCGGCTCGCCTCCATCTCCGTTTCGTACTCGATGCACAGCCTAGCCATGCCGTTCCCCTCACTGCCGCCATGCTCAT

Function

symbol description
rtel1 Predicted to enable several functions, including 4 iron, 4 sulfur cluster binding activity; ATP binding activity; and DNA helicase activity. Predicted to be involved in regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 5. Orthologous to human RTEL1 (regulator of telomere elongation helicase 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU920247 False 621 lncRNA 0.48 3 45227441 45234586
TU920249 True 923 lncRNA 0.53 3 45229458 45237572

Neighbor

gene id symbol gene type direction distance location
chrna4b LOC106572182 coding upstream 35601 45176863 ~ 45191840 (+)
LOC110532183 LOC106572183 coding upstream 108255 45076564 ~ 45119186 (+)
LOC110532184 LOC106572184 coding upstream 141866 45076911 ~ 45085575 (+)
prex1 LOC106572294 coding upstream 154382 44959576 ~ 45073059 (+)
LOC110532181 LOC106572185 coding upstream 268319 44912964 ~ 44959122 (+)
LOC110532188 LOC106572179 coding downstream 48408 45285980 ~ 45298752 (+)
LOC110532189 gmeb2 coding downstream 65794 45303366 ~ 45311274 (+)
LOC118966054 NA coding downstream 78202 45315766 ~ 45318483 (+)
LOC110532191 stk35 coding downstream 168550 45406122 ~ 45424517 (+)
LOC110532193 LOC106572175 coding downstream 225056 45462628 ~ 45484801 (+)
G808777 NA non-coding upstream 6069 45221092 ~ 45221372 (+)
G808724 NA non-coding upstream 65579 45161494 ~ 45161862 (+)
G808722 NA non-coding upstream 66958 45160275 ~ 45160483 (+)
G808712 NA non-coding upstream 73550 45153571 ~ 45153891 (+)
G808793 rtel1 non-coding downstream 3741 45241313 ~ 45253003 (+)
G808823 NA non-coding downstream 46414 45283986 ~ 45327942 (+)
G808863 NA non-coding downstream 120620 45358192 ~ 45358415 (+)
G808869 NA non-coding downstream 128947 45366519 ~ 45366894 (+)
G807841 NA other upstream 774364 44442662 ~ 44453077 (+)
G807677 NA other upstream 1031400 44195715 ~ 44196041 (+)
G805600 NA other upstream 2878655 42346176 ~ 42348786 (+)
G805451 NA other upstream 2895003 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3203038 42021496 ~ 42027071 (+)
G809685 NA other downstream 897159 46134731 ~ 46135732 (+)
G812143 NA other downstream 2744429 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3307882 48545454 ~ 48570593 (+)
G813071 NA other downstream 3722177 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3765747 48962187 ~ 49006710 (+)

Expression


Co-expression Network