Gene
RNA
| Item | Value |
|---|---|
| gene id | G808793 |
| gene name | rtel1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 45241313 ~ 45253003 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rtel1 | Predicted to enable several functions, including 4 iron, 4 sulfur cluster binding activity; ATP binding activity; and DNA helicase activity. Predicted to be involved in regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 5. Orthologous to human RTEL1 (regulator of telomere elongation helicase 1). |
| description |
|---|
| regulator of telomere elongation helicase 1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU920259 | True | 1157 | lncRNA | 0.50 | 4 | 45241313 | 45253003 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| chrna4b | LOC106572182 | coding | upstream | 49473 | 45176863 ~ 45191840 (+) |
| LOC110532183 | LOC106572183 | coding | upstream | 122127 | 45076564 ~ 45119186 (+) |
| LOC110532184 | LOC106572184 | coding | upstream | 155738 | 45076911 ~ 45085575 (+) |
| prex1 | LOC106572294 | coding | upstream | 168254 | 44959576 ~ 45073059 (+) |
| LOC110532181 | LOC106572185 | coding | upstream | 282191 | 44912964 ~ 44959122 (+) |
| LOC110532188 | LOC106572179 | coding | downstream | 32977 | 45285980 ~ 45298752 (+) |
| LOC110532189 | gmeb2 | coding | downstream | 50363 | 45303366 ~ 45311274 (+) |
| LOC118966054 | NA | coding | downstream | 62771 | 45315766 ~ 45318483 (+) |
| LOC110532191 | stk35 | coding | downstream | 153119 | 45406122 ~ 45424517 (+) |
| LOC110532193 | LOC106572175 | coding | downstream | 209625 | 45462628 ~ 45484801 (+) |
| G808783 | rtel1 | non-coding | upstream | 3741 | 45227441 ~ 45237572 (+) |
| G808777 | NA | non-coding | upstream | 19941 | 45221092 ~ 45221372 (+) |
| G808724 | NA | non-coding | upstream | 79451 | 45161494 ~ 45161862 (+) |
| G808722 | NA | non-coding | upstream | 80830 | 45160275 ~ 45160483 (+) |
| G808823 | NA | non-coding | downstream | 30983 | 45283986 ~ 45327942 (+) |
| G808863 | NA | non-coding | downstream | 105189 | 45358192 ~ 45358415 (+) |
| G808869 | NA | non-coding | downstream | 113516 | 45366519 ~ 45366894 (+) |
| G808874 | NA | non-coding | downstream | 120895 | 45373898 ~ 45374231 (+) |
| G807841 | NA | other | upstream | 788236 | 44442662 ~ 44453077 (+) |
| G807677 | NA | other | upstream | 1045272 | 44195715 ~ 44196041 (+) |
| G805600 | NA | other | upstream | 2892527 | 42346176 ~ 42348786 (+) |
| G805451 | NA | other | upstream | 2908875 | 42332093 ~ 42332438 (+) |
| LOC110532114 | LOC106572334 | other | upstream | 3216910 | 42021496 ~ 42027071 (+) |
| G809685 | NA | other | downstream | 881728 | 46134731 ~ 46135732 (+) |
| G812143 | NA | other | downstream | 2728998 | 47982001 ~ 47982301 (+) |
| G812688 | LOC106572106 | other | downstream | 3292451 | 48545454 ~ 48570593 (+) |
| G813071 | NA | other | downstream | 3706746 | 48959749 ~ 48959991 (+) |
| G813074 | etbr2 | other | downstream | 3750316 | 48962187 ~ 49006710 (+) |
