G808869


Basic Information

Item Value
gene id G808869
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45366519 ~ 45366894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU920346
ctccatcatgttttcttccagaatggtcctgtatttggctccatccatcttcccatgaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccgaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtacaatatacgactg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU920346 True 376 lncRNA 0.44 1 45366519 45366894

Neighbor

gene id symbol gene type direction distance location
LOC118966054 NA coding upstream 48721 45315766 ~ 45318483 (+)
LOC110532189 gmeb2 coding upstream 55245 45303366 ~ 45311274 (+)
LOC110532188 LOC106572179 coding upstream 67767 45285980 ~ 45298752 (+)
chrna4b LOC106572182 coding upstream 174679 45176863 ~ 45191840 (+)
LOC110532184 LOC106572184 coding upstream 280944 45076911 ~ 45085575 (+)
LOC110532191 stk35 coding downstream 39228 45406122 ~ 45424517 (+)
LOC110532193 LOC106572175 coding downstream 95734 45462628 ~ 45484801 (+)
LOC110532192 LOC106572174 coding downstream 118778 45485672 ~ 45494087 (+)
LOC110532197 cept1 coding downstream 151148 45518042 ~ 45541267 (+)
LOC110532198 dram2 coding downstream 174549 45541443 ~ 45546493 (+)
G808863 NA non-coding upstream 8104 45358192 ~ 45358415 (+)
G808823 NA non-coding upstream 38577 45283986 ~ 45327942 (+)
G808793 rtel1 non-coding upstream 113516 45241313 ~ 45253003 (+)
G808783 rtel1 non-coding upstream 128947 45227441 ~ 45237572 (+)
G808874 NA non-coding downstream 7004 45373898 ~ 45374231 (+)
G809234 NA non-coding downstream 232445 45599339 ~ 45604558 (+)
G809248 LOC106572168 non-coding downstream 249250 45616144 ~ 45616483 (+)
G809249 NA non-coding downstream 249984 45616878 ~ 45617212 (+)
G809256 efhd2 non-coding downstream 264878 45631772 ~ 45715145 (+)
G807841 NA other upstream 913442 44442662 ~ 44453077 (+)
G807677 NA other upstream 1170478 44195715 ~ 44196041 (+)
G805600 NA other upstream 3017733 42346176 ~ 42348786 (+)
G805451 NA other upstream 3034081 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3342116 42021496 ~ 42027071 (+)
G809685 NA other downstream 767837 46134731 ~ 46135732 (+)
G812143 NA other downstream 2615107 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 3178560 48545454 ~ 48570593 (+)
G813071 NA other downstream 3592855 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3636425 48962187 ~ 49006710 (+)

Expression


Co-expression Network