XLOC_027150 (BX649349.1)


Basic Information

Item Value
gene id XLOC_027150
gene name BX649349.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11285929 ~ 11289783 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053496
GGGACTGGATTAGCTGGCGGGTCGAGGGCctgaagctgttttttttagttCTGGACCCTGCAGTGTTTTGCCTGCGCAGCTTGAGTTAATCTCCCACCCTCTGAGACACCTCCCAACAAGACCCCTGAGCATGCGGCTGAATACTGCGGATTGTTGCGTGTCAGGACAAGGGGTTGTTTTCAAAGTGGAGCACGTCAGTTCTCTGAAGTGTCTCACTGATGGAAGCGAGAGGATGATGTTGTCTGGAAAGGAATGAATGAGACTGATCTTCTGCCAGGGAATTTCTTCTGCGGATACATCCAGAAGAGCTTTTTGGCCAGCCTGTAACTTTTCCTAAAGCACGTCAAACATCACATACCTGATAATCATTTTGTGAAGCCTCTTCAATATAGAAGCGTTCATGAGATCATCGGTCAGGATTACAAGATAATGATTAttataaatgtgcatttttttgtatattattaacgCTCTATCTATCTGACAGTAGTATACTTGCAGTATCAGCATGTACATTAATGTTTGAAGGAGATGTCAGCTTCCAGCCAAGTCTTTATGTCTTGAGCCAATCGCTATTGTCATGAGCGCCAATGCCAACAGTAGAAAAGCCTATTAGTGTTTCCCTAAAGCAACCACAGAATGCACACTGGACGGCTCTGATGGATGGCATGTCATAATGGAATGAGGACTGAATGAAGGCTTATTTATGTACAAAGCCTGCAGACTCAATGAAATGCATTCCAAGGACAGAAAACATCTCATTTCAATTACGAATCTCGGTTAAGTGAAGAATTCCCACTGTGTAAATCAGTGCTGCGCTCATGTTAATCACTTGACCCGCTCTGCTGTGGGGAAATGCActaaaaatgtgtattatttgacaataaaagATAATGGCGTGTTTCACTTGAAGTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053496 True 916 lncRNA 0.43 2 11285929 11289783

Neighbor

gene id symbol gene type direction distance location
XLOC_027149 BX784029.3 coding upstream 47907 11202941 ~ 11238022 (+)
XLOC_027148 tspan11 coding upstream 87874 11172964 ~ 11198055 (+)
XLOC_027147 cracr2ab coding upstream 136988 11135048 ~ 11148941 (+)
XLOC_027146 ccdc59 coding upstream 230192 11053301 ~ 11055737 (+)
XLOC_027145 syt10 coding upstream 376843 10888762 ~ 10909086 (+)
XLOC_027151 sema3aa coding downstream 21532 11311315 ~ 11368490 (+)
XLOC_027152 pcloa coding downstream 86111 11375894 ~ 11450040 (+)
XLOC_027153 ankrd16 coding downstream 168295 11458078 ~ 11462702 (+)
XLOC_027154 gdi2 coding downstream 174472 11464255 ~ 11477630 (+)
XLOC_027155 asb13a.1 coding downstream 189922 11479705 ~ 11483190 (+)
XLOC_027144 NA non-coding upstream 458937 10816130 ~ 10826992 (+)
XLOC_027143 NA non-coding upstream 494690 10764277 ~ 10791239 (+)
XLOC_027141 NA non-coding upstream 570337 10714745 ~ 10715592 (+)
XLOC_027135 NA non-coding upstream 1224481 10058101 ~ 10061448 (+)
XLOC_027157 BX465862.5 non-coding downstream 276257 11566040 ~ 11566156 (+)
XLOC_027158 NA non-coding downstream 338387 11628170 ~ 11628612 (+)
XLOC_027160 NA non-coding downstream 472171 11761954 ~ 11772599 (+)
XLOC_027161 NA non-coding downstream 500016 11789799 ~ 11793783 (+)
XLOC_027162 NA non-coding downstream 657092 11946875 ~ 11950926 (+)

Expression


Co-expression Network