G809441


Basic Information

Item Value
gene id G809441
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45788755 ~ 45789610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU920983
ctagaaaaccATTTTCacatcttgccatagatttgcgTGTAGATTTATgccaaaactgtaactctgccactcgggaacattcactgtcttctaggtaagcaactccagtgtagatttggccttgtgtttcatGGTATtgtactgctgaaaggtgaattaatctccctgtgtctggtggaaagcagactgaaccaggttttcctctaggattttgcctgtgcttagctccattccgtttcttttttattcttaaatactccccagtccttaatgattacaagcatacccataacatgatgcagccatcactatAGTTGAAAATAAGGCGAgcagtactcagtaatgtgttgtatgatTTGCCCAAACGTAACAcagtattcaggacaaaaagttgcTTGCCACATTTGCTGCAGTATTATTTTAgttccttgttgcaaacaggatgcattttatttaatatttttattCTATACAGGCGTCCTTAttttcactgttttaaagtcatcattggcctcatggtgaaattccagAAATTCCTCTTTGGCAACGGAGTTAGGAAAgactcctgtatctttgtagttactgggtgtattgatacaccatccaacgtgtaattaataactttaccatgctcaaagggatatacaATGTCCGCTTTTATATTTGtagccatctaccaataggtgcccttctttgcgagacattggaaataatccctggtctttgtggttgaatcggtgtttgaaattcactgctcgacagaGGGACctaa

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU920983 True 772 lncRNA 0.39 2 45788755 45789610

Neighbor

gene id symbol gene type direction distance location
ela2l LOC106572163 coding upstream 13747 45771365 ~ 45775008 (+)
LOC110532198 dram2 coding upstream 242262 45541443 ~ 45546493 (+)
LOC110532197 cept1 coding upstream 247488 45518042 ~ 45541267 (+)
LOC110532192 LOC106572174 coding upstream 294668 45485672 ~ 45494087 (+)
LOC110532193 LOC106572175 coding upstream 303954 45462628 ~ 45484801 (+)
LOC110532211 LOC106572158 coding downstream 369339 46158949 ~ 46185603 (+)
ccdc30 ccdc30 coding downstream 417786 46207396 ~ 46249943 (+)
LOC110532217 LOC106572155 coding downstream 473597 46263207 ~ 46277905 (+)
LOC118966055 NA coding downstream 511654 46301264 ~ 46304747 (+)
LOC118966056 NA coding downstream 519402 46309012 ~ 46310775 (+)
G809438 NA non-coding upstream 1996 45786407 ~ 45786759 (+)
G809344 NA non-coding upstream 21683 45766665 ~ 45767072 (+)
G809342 NA non-coding upstream 24697 45760116 ~ 45764058 (+)
G809340 NA non-coding upstream 31423 45757117 ~ 45757332 (+)
G809329 NA non-coding upstream 45696 45742807 ~ 45743059 (+)
G809617 NA non-coding downstream 251035 46040645 ~ 46041255 (+)
G809666 NA non-coding downstream 316782 46106392 ~ 46106592 (+)
G809687 NA non-coding downstream 351390 46141000 ~ 46141200 (+)
G809691 NA non-coding downstream 354853 46144463 ~ 46144679 (+)
G809979 NA non-coding downstream 413118 46202728 ~ 46203412 (+)
G807841 NA other upstream 1335678 44442662 ~ 44453077 (+)
G807677 NA other upstream 1592714 44195715 ~ 44196041 (+)
G805600 NA other upstream 3439969 42346176 ~ 42348786 (+)
G805451 NA other upstream 3456317 42332093 ~ 42332438 (+)
LOC110532114 LOC106572334 other upstream 3764352 42021496 ~ 42027071 (+)
G809685 NA other downstream 345121 46134731 ~ 46135732 (+)
G812143 NA other downstream 2192391 47982001 ~ 47982301 (+)
G812688 LOC106572106 other downstream 2755844 48545454 ~ 48570593 (+)
G813071 NA other downstream 3170139 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 3213709 48962187 ~ 49006710 (+)

Expression


Co-expression Network