G810563


Basic Information

Item Value
gene id G810563
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46253514 ~ 46256922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU922220
cagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggccgatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaagaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactctttggcaacaatgcaagacgttatgtttggcgtaaaagcaacacagctcatcaccttgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattga
>TU922219
tttgccttgatgacagctttgaacactcctggcactctctcaaccagcttcatgaggaatgcttttccaacagtcttgaaagagttcccacatatgctgagcacttcttggctgatttttcttcactttgcggtccaactcatcccaaaccatctcagttgggttgaagtcaggtgattgtggaggccaggttatctgatgcagcactccatcaatctccttcttggtcaaatagcccttacacagcctggaggtgtgttttgggtaattgtcctgttgaaaaaaatatataaaaaaaattagtcccagtaagcacaaaccagatgggatggcgaatcactgcagaatgctgtggtagccatgctggttaaatgtgccttgtattctaaataaatcacagactgtgtcaccagcaaagcaccatcacaccacctcctccatgcttcatggtgggaaccacacgtgcggagatcatccgttcacctactctgcgtttcacaaatatatggcggttgaaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtttaatgtccattgctcatgtttcttggtccaagtaagtctcttcttattgatgtcctttagtagtggtttctttgcagcaattcgaccatgaaggcccaATTCATGCAGtcgtctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgctgctactctaatgaacgtatcctctgcagcagaggtaactctaggtcttcctttcctgtggcggtcctcatgatagccagtttcatcatagcgcttgatggcttttgcaactgcacttcaATACGAAATGttacgtattgactgaccttcatgtcttaagtaatgtcgtttctctttgcttatttgagctgtttttgccataatatggacttggtcttttaccaaatagggctatctcctatataccacccctaccatgtcacaacacaagcTCAGCTCATTCGCATTAAGAACTTAAGAATTCcccaaatgaacttttaacaagacacccctgttaattgaaatgcattccaggttaagctggttgagagaatgccaagagtgtgcaaagctgtcattaaggcaaagggtggctactttgaagaatctcaaatataaaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaagtgtattattttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcataatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatccaaaggagcactgttcaagcgatactattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggccgatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaagaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactctttggcaacaatgcaagacgttatgtttggcgtaaaagcaacacagctcatcaccttgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcc
>TU922210
gggtctgaatactttccgaaaacaCTGTATGCATTCACATGACACCTGACATTCATTTCCAAACCCCTTGTTCTATTTTGACACAGATTGGGTCGGTTAaatgaaaacaaacacattctttgCAAAAATGTATGTCAATGGAAACAAATGTCGGATAATGTCTCGCGTCGAATAAAACTGAGCACTTACAAAGGCGTTTTGAAAACAGtgatatatagtaccagtcaaaagtttagacacacctactcagcattttttttctttatttttactattttctacattgtagaataaatagtgaagacatcaaaactatgaaataacacatatgggaacATGTAGTAATgaaaaatgttttaaacaaatcaacatatattttagattcttctaagtagccaccctttgccttgatgacagctttgaacactcctggcactctctcaaccagcttcatgaggaatgcttttccaacagtcttgaaagagttcccacatatgctgagcacttcttggctgatttttcttcactttgcggtccaactcatcccaaaccatctcagttgggttgaagtcaggtgattgtggaggccaggttatctgatgcagcactccatcaatctccttcttggtcaaatagcccttacacagcctggaggtgtgttttgggtaattgtcctgttgaaaaaaatatataaaaaaaattagtcccagtaagcacaaaccagatgggatggcgaatcactgcagaatgctgtggtagccatgctggttaaatgtgccttgtattctaaataaatcacagactgtgtcaccagcaaagcaccatcacaccacctcctccatgcttcatggtgggaaccacacgtgcggagatcatccgttcacctactctgcgtttcacaaatatatggcggttgaaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtttaatgtccattgctcatgtttcttggtccaagtaagtctcttcttattgatgtcctttagtagtggtttctttgcagcaattcgaccatgaaggcccaATTCATGCAGtcgtctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgctgctactctaatgaacgtatcctctgcagcagaggtaactctaggtcttcctttcctgtggcggtcctcatgatagccagtttcatcatagcgcttgatggcttttgcaactgcacttcaATACGAAATGttacgtattgactgaccttcatgtcttaagtaatgtcgtttctctttgcttatttgagctgtttttgccataatatggacttggtcttttaccaaatagggctatctcctatataccacccctaccatgtcacaacacaagcTCAGCTCATTCGCATTAAGAACTTAAGAATTCcccaaatgaacttttaacaagacacccctgttaattgaaatgcattccaggttaagctggttg
>TU922213
tttaatgtccattgctcatgtttcttggtccaagtaagtctcttcttattgatgtcctttagtagtggtttctttgcagcaattcgaccatgaaggcccaATTCATGCAGtcgtctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgctgctactctaatgaacgtatcctctgcagcagaggtaactctaggtcttcctttcctgtggcggtcctcatgatagccagtttcatcatagcgcttgatggcttttgcaactgcacttcaATACGAAATGttacgtattgactgaccttcatgtcttaagtaatgtcgtttctctttgcttatttgagctgtttttgccataatatggacttggtcttttaccaaatagggctatctcctatataccacccctaccatgtcacaacacaagcTCAGCTCATTCGCATTAAGAACTTAAGAATTCcccaaatgaacttttaacaagacacccctgttaattgaaatgcattccaggttaagctggttg
>TU922212
gggtctgaatactttccgaaaacaCTGTATGCATTCACATGACACCTGACATTCATTTCCAAACCCCTTGTTCTATTTTGACACAGATTGGGTCGGTTAaatgaaaacaaacacattctttgCAAAAATGTATGTCAATGGAAACAAATGTCGGATAATGTCTCGCGTCGAATAAAACTGAGCACTTACAAAGGCGTTTTGAAAACAGtgatatatagtaccagtcaaaagt
>TU922218
aaggcacctaaagattctcagaccatgagaaacaatattttctggtctgataaaaccaagattggactctttggcctgaaagccaagcgtcacatctggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcagcatcatgctatggggatgtttttcagcggcagggactgggagattagtcagaatctaggcaaagatgaacagagcaaagtatagagaaatcccagatgaaaacctgcaccagagcgctcaggacctcagacttgggcgaaggttcaccttccaacaggagaatgaccctaagcacacagccaagacaaagcaggacaagtctcaatgtccttgagtggcccatccaaAGCCCGGACATCTCTTGACCTGATAATATCTGTGCAGAAactctcctcatccaacctgacagagcttgagaggatctgtaaagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgatgctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgacctttctgtttttttgcaaaaatgtctaaaaaccagtttttgctttgtcttaatggggtattgtgtgtagattggtgagggtaaaaaacaatttaatcaattttagaataaggctgtaacataacaaaatgtggaaaaagtcaaggggtctgaatactttccgaaaacaCTGTATGCATTCACATGACACCTGACATTCATTTCCAAACCCCTTGTTCTATTTTGACACAGATTGGGTCGGTTAaatgaaaacaaacacattctttgCAAAAATGTATGTCAATGGAAACAAATGTCGGATAATGTCTCGCGTCGAATAAAACTGAGCACTTACAAAGGCGTTTTGAAAACAGtgatatatagtaccagtcaaaagt
>TU922214
gaatggccagacggaagccactcctcagtaaaaggcacacgacggcctgcttggagtttgccaaaaggcacctaaagattctcagaccatgagaaacaatattttctggtctgataaaaccaagattggactctttggcctgaaagccaagcgtcacatctggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcagcatcatgctatggggatgtttttcagcggcagggactgggagattagtcagaatctaggcaaagatgaacagagcaaagtatagagaaatcccagatgaaaacctgcaccagagcgctcaggacctcagacttgggcgaaggttcaccttccaacaggagaatgaccctaagcacacagccaagacaaagcaggacaagtctcaatgtccttgagtggcccatccaaAGCCCGGACATCTCTTGACCTGATAATATCTGTGCAGAAactctcctcatccaacctgacagagcttgagaggatctgtaaagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgatgctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgacctttctgtttttttgcaaaaatgtctaaaaaccagtttttgct
>TU922216
aaggcacctaaagattctcagaccatgagaaacaatattttctggtctgataaaaccaagattggactctttggcctgaaagccaagcgtcacatctggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcagcatcatgctatggggatgtttttcagcggcagggactgggagattagtcagaatctaggcaaagatgaacagagcaaagtatagagaaatcccagatgaaaacctgcaccagagcgctcaggacctcagacttgggcgaaggttcaccttccaacaggagaatgaccctaagcacacagccaagacaaagcaggacaagtctcaatgtccttgagtggcccatccaaAGCCCGGACATCTCTTGACCTGATAATATCTGTGCAGAAactctcctcatccaacctgacagagcttgagaggatctgtaaagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgatgctgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaaggg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU922220 False 482 TUCP 0.46 1 46253514 46253995
TU922219 False 2164 TUCP 0.42 1 46253555 46255718
TU922210 False 1528 lncRNA 0.40 1 46254592 46256119
TU922213 False 558 lncRNA 0.41 1 46254592 46255149
TU922212 False 232 lncRNA 0.37 1 46255888 46256119
TU922218 False 971 lncRNA 0.42 1 46255888 46256858
TU922214 False 702 lncRNA 0.47 1 46256221 46256922
TU922216 True 571 lncRNA 0.48 1 46256288 46256858

Neighbor

gene id symbol gene type direction distance location
LOC110532213 emp3 coding downstream 47888 46202726 ~ 46206704 (-)
zmynd12 zmynd12 coding downstream 54342 46187156 ~ 46200250 (-)
LOC110532208 LOC106572161 coding downstream 213327 45816274 ~ 46041265 (-)
tmem51a LOC106572162 coding downstream 448728 45793209 ~ 45805864 (-)
ela2 LOC106572326 coding downstream 490574 45760116 ~ 45764018 (-)
LOC110532215 LOC106572154 coding upstream 1113 46256999 ~ 46263834 (-)
alas2 alas2 coding upstream 48537 46305459 ~ 46317525 (-)
LOC110532223 LOC100380856 coding upstream 136179 46393101 ~ 46525481 (-)
LOC110531189 pigt coding upstream 387868 46644716 ~ 46656973 (-)
LOC110532229 sycp2 coding upstream 462640 46719562 ~ 46781807 (-)
G810560 NA non-coding downstream 1664 46250051 ~ 46252928 (-)
G809974 NA non-coding downstream 103691 46150656 ~ 46150901 (-)
G809971 NA non-coding downstream 105978 46148166 ~ 46148614 (-)
G809967 NA non-coding downstream 112096 46142297 ~ 46142496 (-)
G809966 NA non-coding downstream 114488 46139856 ~ 46140104 (-)
G810595 NA non-coding upstream 45801 46302723 ~ 46302961 (-)
G810596 NA non-coding upstream 47215 46304137 ~ 46304413 (-)
G810623 LOC106572152 non-coding upstream 87752 46344674 ~ 46346295 (-)
G810638 NA non-coding upstream 108454 46365376 ~ 46371475 (-)
pdyn pdyn other downstream 935826 45316564 ~ 45318766 (-)
G809071 LOC106572179 other downstream 956742 45295856 ~ 45298740 (-)
G808375 NA other downstream 1617746 44634559 ~ 44636846 (-)
G807941 NA other downstream 1892426 44361416 ~ 44362166 (-)
G811300 NA other upstream 921882 47178804 ~ 47181797 (-)
LOC110531190 clcn6 other upstream 1406143 47642136 ~ 47676649 (-)
LOC110532252 fkb1a other upstream 2021252 48278174 ~ 48286453 (-)
G812840 NA other upstream 2251723 48508645 ~ 48509094 (-)
G813357 LOC106578276 other upstream 2658513 48915435 ~ 48915704 (-)

Expression


Co-expression Network