XLOC_027159 (mkln1)


Basic Information

Item Value
gene id XLOC_027159
gene name mkln1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11690923 ~ 11730768 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053516
GTTTTAAATTAGACAGCAGTCGCATATTTCATCCAGGACTAAAATCTCACACGTTCACcaacaactttggattttaatctGCGCAACAGAGACCGGAATGCGGACGTTGGCAAGGAATATTTTAGTGGATAAACCTAATGATCAGTCTTCCAGGTGGTCATCTGAGAGCAACTACCCTCCACAGTACTTGATCCTAAAACTGGAGAGACCAGCTATAGTTCTGAGCATCACCTATGGCAAATATGAGAAAACCCACGTCTGCAACCTGAAGAAGTTTAAGGTGTTCGGAGGCATGAGTGAAGAAAACATGACGGAGCTCTTGTCTAGTGGCCTTAAGAATGACTTCAACAAGGAGACGTTCACGCTAAAGCACAAGATCGATGAGCAAATGTTTCCCTGCAGGTTCATTAAAATAGTGCCTCTGATGTCATGGGGGCCCAGTTTTAACTTCAGCATTTGGTTTATTGAGTTACACGGCATTGAAGATCCAGAGGTTGTCCAGCCCTGCCTTAACTGGTACAGTAAGTACCGTGAACAAGAGGCCATCCGCTTGTGCCTGAAACACTTCCGGCAGCACAACTACACAGAAGCCTTCGAATCCCTGCAGAAGAAAACACGGATCGCTCTGGAGCACCCCATGCTTACGCACCTACACGAGCGGCTGGTTCTCAGAGGAGACTTTGACGCCTGCGAGGAGCTGATAGATAAGGCCGTGAGAGGT
>TCONS_00053517
gtgtgtgtgtgtgtctttcgaTCAAGATGGCGGTGGCTCCTGACAGCAGAGTGCTTTCCTACAGTGTTTATAAATGGAGCTCGTACTCCTCTACATATTTACCCGAGAATATTTTAGTGGATAAACCTAATGATCAGTCTTCCAGGTGGTCATCTGAGAGCAACTACCCTCCACAGTACTTGATCCTAAAACTGGAGAGACCAGCTATAGTTCTGAGCATCACCTATGGCAAATATGAGAAAACCCACGTCTGCAACCTGAAGAAGTTTAAGGTGTTCGGAGGCATGAGTGAAGAAAACATGACGGAGCTCTTGTCTAGTGGCCTTAAGAATGACTTCAACAAGGAGACGTTCACGCTAAAGCACAAGATCGATGAGCAAATGTTTCCCTGCAGGTTCATTAAAATAGTGCCTCTGATGTCATGGGGGCCCAGTTTTAACTTCAGCATTTGGTTTATTGAGTTACACGGCATTGAAGATCCAGAGGTTGTCCAGCCCTGCCTTAACTGGTACAGTAAGTACCGTGAACAAGAGGCCATCCGCTTGTGCCTGAAACACTTCCGGCAGCACAACTACACAGAAGCCTTCGAATCCCTGCAGAAGAAAACACGGATCGCTCTGGAGCACCCCATGCTTACGCACCTACACGAGCGGCTGGTTCTCAGAGGAGACTTTGACGCCTGCGAGGAGCTGATAGATAAGGCCGTGAGAGATGGTTTGTTTAATCAGTACATCAGCCAGCAGGATTATAAGCCACGCTGGAGTCAGATCATCCCCAAATGTAACAAAGGCGATGGTGATGATAACAGGCCGGGCATGAGAGGAGGTCATCAAATGGTCATTGATGTTCAGACAGAAACCGTGTATTTGTTCGGTGGCTGGGATGGAACGCAGGACTTGGCTGATTTCTGGGCGTACAGTGTGAAGGAGAACCAATGGGCCTGCATCTCCAGGGACACAGAGAAAGAGagtggTCCCAGTGCTCGTTCATGCCACAAAATGTGCATCGATTCTCAACGGAGGCAGATCTACACGCTGGGCCGATATCTGGACTCCTCGGTCAGAAACAGCaagtctctgaagagtgacttcTACTGCTACGACATTGACGCAAACACGTGGACCCTCCTGAGTGAAGACACATCCGCTGATGGAGGACCCAAACTTGTGTTCGACCACCAGATGTGCATGGACTCTGAGAAGCACATGATCTACACGTTTGGTGGTCGGATACTGACGTGTAATGGCAGCGTGGATGATGGCAGGACGTCTGAACCTCAGTTCAGTGGGCTTTACGCGTATCACTGTCAAGCTGGCAGCTGGAGCCTACTCCGAGAAGACTCGTGTAACGCAGGGCCGGAGGACATCCAATCTCGCATCGGACACTGCATGCTCTTCCACACGAGAAATCGTTGCCTGTATGTTTTTGGAGGTCAGAGGTCCAAAACGTACTTGAATGATTTTTTCAGTTACGATGTTGACGGTGACCATGTGGAGATCATCTCAGATGGCACCAAGAAGGACTCTGGCATGGTACCAATGACGGGCTTTACTCAGCGTGCCACTATTGACCCAGAGCTCAACGAGATTCACGTCCTGTCGGGACTCAGCAAAGACAAAGACAAACGTGAGGAGAACGTGCGCAACTCCTTCTGGATTTATGACATCGCACGCAACAACTGgtCCTGTGTTTATAAGAACGACCAAGCGGTGAAGGAAAACCCCACTAAGGCCCTGCAGGAAGAGGAACCTTGTCCTCGGTTTGCTCATCAGCTTGTCTACGATGAACTCCACAAGGTGCATTACCTGTTTGGTGGAAACCCAGGAAAGTCCAGCTCTCCCAAAATGCGACTGGATGACTTCTGGTCCCTAAAGCTCTGCCGCCCTTCCAAAGAATACCTGCTGCGTCACTGCAAATACCTCATTCGCAAATACAGgtttGAGGAAAAGGCTCAGACCGAGCCCTTGAATGCACTTAAATATCTACAGAATGATCTGTCCCTCACTGTGGACCACACTGATCCTGATGAGACGAAAGAGTTCCAGCTCTTGCCCTCCGCTCTGTTCAAATCCAGCTCAGACTTCATTCCTCTAGGCTTTTCAGATGTGGATCAGACGTACGCCCAGCGCACACAGCTGTTCGACACACTCGTCAATTTCTTCCCCGACAATATGACCCCGCCCAAGGGTAACCTCGTCGACCTCATCACCCTGTAGCCACGCCCACACACACTAGACCTCTCAGACTCCTCCCACTCAAAAACAGAAGTTATTTTTCTACATTTTCCCACCCGAGGTGAGCCGTGCCCACCTTACCTGTGTTTCAGATATAAAGTCACTTAAACGACTTATTCAGAAATATAATTTCTGCTCTGGATAACCagggtttttgttttattttatatataaatatgattttttttttattttaagaactaGGTTTAAATTTAAACGCCAAGTACTTTTATCACATTGAATTTCCTCTCATCCAAGTTGAAATGTAggtgagttttgttttgttttaaattgaacTGTTTACATCCTGAAGAGTTGGATTTGATTTACGCACTGTGTGTTTAACATTGGTTTCCTTTCTGCCTTGCtcttttaaatcactttttttagtGACATAAACCTGTGTTTGAGGTCGAAGGCAAACAccacagcgccctctagagtAAAACCTATCAGATAAAAGGATCCAGTCTCTCTTTTGAATACTGGCTTCCATCTAAACCCGCTGCTGCTATTAGATGCTGCCGTGACATTAGCGCTTTCTCTTTAATAGTGATCAAACATCACATTACATCCTTCTAAGTTCATCCACCACAAGCAATGAGATGTTACACATACGCtttccactgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtggtagcaCATGGCCATTTACGGCAACACTAAACATCATTACACTCATATCCATTAGCATATGGATTTGCTGCAATTAGACGAAGACGTGGATTGACTGATTGTGTACATTACTATTTACTAAATGTTTGCTGTATACAAGTATTGGTACAAACTCTCAAAGGAGCCTTACATGGGACCACTGAAGACAGCAGAGACCCCTTATTATTTATGACtattaatatatattgttttttcttGGACGACTTGAGCCCTGAATGTCACGTCTTATGTCATAGAGATGTTTATATGAGCTTCCGGATTCCCATCCTGGACAGATGAATGTGCGCTGGATGAAAGTCTTCCGTGTAGTTAAGCGCGAGTGTGTGTGCAATGTTAGTTTACAGTCATTTGTCTTCATGTTGCACGAGTTTAAACGAGTTTTGCGCAATCGGATCGCTGTAGTTTTCCAAAACCAAAGGCTCCAGAATCATGGGATAGTAACATTACGCTTCATCCGGCTCATTTTGTCTTCTCCAGCGTCACATATCAGTATTAGCTGTGATATTTGGCTCGGTGCAGATACACTTGCATTgccctgtttttgttttatataaatgatTCAGCACTTTTGATTTCTCTCCTGGTGCAGTTTGGGTGTTTATGATTTTTCAATCCAAgcctttttttttgccttttgtagCTGTCGTTGTCTTTGTGCCAGGAGGAAagcttaaaatatgtttaaaaaatatatataatgaaatcAAGGAGGATCACGCAAGAGAATCGACACACAACCGCAGACTTTCGATGTCGCACTCAATGCCaaattttgttctttttattttgttttatttttcgtTTGGTGTACATTTCTGCAGTGTCAGAGATGAAGTGACTTTCTGGAAACGGTCATCTCGGTGAGCAACGGCGCTTTGAGATGTCAGCACTACACTGTGGCTCTCATGAATGTGTAGAACCTATTAAAACTGCATTGTATGTAATGTACATAAAGAATAAAGATTGTATTTTGTTCAGGTTTTCGTAAAAAA
>TCONS_00053518
GGAGCTCGTACTCCTCTACATATTTACCCGAGAATATTTTAGTGGATAAACCTAATGATCAGTCTTCCAGGTGGTCATCTGAGAGCAACTACCCTCCACAGTACTTGATCCTAAAACTGGAGAGACCAGCTATAGTTCTGAGCATCACCTATGGCAAATATGAGAAAACCCACGTCTGCAACCTGAAGAAGTTTAAGGTGTTCGGAGGCATGAGTGAAGAAAACATGACGGAGCTCTTGTCTAGTGGCCTTAAGAATGACTTCAACAAGGAGACGTTCACGCTAAAGCACAAGATCGATGAGCAAATGTTTCCCTGCAGGTTCATTAAAATAGTGCCTCTGATGTCATGGGGGCCCAGTTTTAACTTCAGCATTTGGTTTATTGAGTTACACGGCATTGAAGATCCAGAGGTTGTCCAGCCCTGCCTTAACTGGTACAGTAAGTACCGTGAACAAGAGGCCATCCGCTTGTGCCTGAAACACTTCCGGCAGCACAACTACACAGAAGCCTTCGAATCCCTGCAGAAGAAAACACGGATCGCTCTGGAGCACCCCATGCTTACGCACCTACACGAGCGGCTGGTTCTCAGAGGAGACTTTGACGCCTGCGAGGAGCTGATAGATAAGGCCGTGAGAGGTACCTCACCCACGGTTTCATCATATGGATCTGCGCCATATTCATTAAGTAGGGAATGTGGGCATGTTGGTTCACTGTAGGGAACAGAATGGTTCTGGATTGTAATCGTGTTACGTGGTGAGCAAGTACATCCTTGTTGACGTTTAATGTCAAATATAGATGATCTCTGCACAGAAGGTCAGGT
>TCONS_00053519
AGAAAACTCAGTCAGTCTTTCTCTtggatctgctgctgctttctgtcactttttgtttatttgactCGATTTGGgtCCTGTGTTTATAAGAACGACCAAGCGGTGAAGGAAAACCCCACTAAGGCCCTGCAGGAAGAGGAACCTTGTCCTCGGTTTGCTCATCAGCTTGTCTACGATGAACTCCACAAGGTGCATTACCTGTTTGGTGGAAACCCAGGAAAGTCCAGCTCTCCCAAAATGCGACTGGATGACTTCTGGTCCCTAAAGCTCTGCCGCCCTTCCAAAGAATACCTGCTGCGTCACTGCAAATACCTCATTCGCAAATACAGgtttGAGGAAAAGGCTCAGACCGAGCCCTTGAATGCACTTAAATATCTACAGAATGATCTGTCCCTCACTGTGGACCACACTGATCCTGATGAGACGAAAGAGTTCCAGCTCTTGCCCTCCGCTCTGTTCAAATCCAGCTCAGACTTCATTCCTCTAG
>TCONS_00053520
ACTGCATGATCTGCATGTcttcttaatcaaacacacctgattcaactCATCAGCTCGTTAGCAGAGACTCCAGGACCTCAAATGATTGTGTGAGACAAAGGAGACGTGCGTGAAATTAACTATCATTTTTGTCATCTGAAGTTAACTTGGCTGGAAAAAATGGACATGAAATAATAAGTAAGGTGCATTACCTGTTTGGTGGAAACCCAGGAAAGTCCAGCTCTCCCAAAATGCGACTGGATGACTTCTGGTCCCTAAAGCTCTGCCGCCCTTCCAAAGAATACCTGCTGCGTCACTGCAAATACCTCATTCGCAAATACAGgtttGAGGAAAAGGCTCAGACCGAGCCCTTGAATGCACTTAAATATCTACAGAATGATCTGTCCCTCACTGTGGACCACACTGATCCTGATGAGACGAAAGAGTTCCAGCTCTTGCCCTCCGCTCTGTTCAAATCCAGCTCAGACTTCATTCCTCTAGGCTTTTCAGATGTGGATCAGACGTACGCCCAGCGCACACAGCTGTTCGACACACTCGTCAATTTCTTCCCCGACAATATGACCCCGCCCAAGGGTAACCTCGTCGACCTCATCACCCTGTAGCCACGCCCACACACACTAGACCTCTCAGACTCCTCCCACTCAAAAACAGAAGTTATTTTTCTACATTTTCCC

Function

symbol description
mkln1 Predicted to be active in cytoplasm. Orthologous to human MKLN1 (muskelin 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-3942 Predicted to be active in cytoplasm. Orthologous to human MKLN1 (muskelin 1).

Ensembl:

ensembl_id ENSDARG00000025576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053516 False 721 mRNA 0.47 6 11690923 11706486
TCONS_00053517 False 3926 mRNA 0.45 18 11695979 11730768
TCONS_00053518 False 820 lncRNA 0.47 6 11696054 11706668
TCONS_00053519 False 487 mRNA 0.48 5 11723852 11728851
TCONS_00053520 True 674 processed_transcript 0.47 5 11724230 11729130

Neighbor

gene id symbol gene type direction distance location
XLOC_027158 NA coding upstream 62311 11628170 ~ 11628612 (+)
XLOC_027157 BX465862.5 coding upstream 124767 11566040 ~ 11566156 (+)
XLOC_027156 asb13a.2 coding upstream 166035 11483335 ~ 11524888 (+)
XLOC_027155 asb13a.1 coding upstream 207733 11479705 ~ 11483190 (+)
XLOC_027154 gdi2 coding upstream 213293 11464255 ~ 11477630 (+)
XLOC_027160 NA coding downstream 31186 11761954 ~ 11772599 (+)
XLOC_027161 NA coding downstream 59031 11789799 ~ 11793783 (+)
XLOC_027162 NA coding downstream 216107 11946875 ~ 11950926 (+)
XLOC_027163 cry1a coding downstream 282275 12013043 ~ 12026507 (+)
XLOC_027164 tnnt2c coding downstream 301190 12031958 ~ 12033866 (+)
XLOC_027150 BX649349.1 non-coding upstream 401140 11285929 ~ 11289783 (+)
XLOC_027149 BX784029.3 non-coding upstream 452901 11202941 ~ 11238022 (+)
XLOC_027144 NA non-coding upstream 863931 10816130 ~ 10826992 (+)
XLOC_027165 NA non-coding downstream 308881 12039649 ~ 12052670 (+)
XLOC_027166 NA non-coding downstream 333223 12063991 ~ 12065363 (+)

Expression


Co-expression Network