Gene
RNA
| Item | Value |
|---|---|
| gene id | G811415 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048573.1 |
| NCBI id | CM023227.2 |
| chromosome length | 79455637 |
| location | 47337743 ~ 47337942 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU923163 | True | 200 | lncRNA | 0.43 | 1 | 47337743 | 47337942 |
47,336,400
47,336,800
47,337,200
47,337,600
47,338,000
47,338,400
47,338,800
47,339,200
47,339,600
47,340,000
47,340,400
NC_048573.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532236 | LOC106572136 | coding | upstream | 118569 | 47191735 ~ 47219174 (+) |
| klhl17 | LOC106572137 | coding | upstream | 155935 | 47149946 ~ 47181808 (+) |
| LOC118966184 | NA | coding | upstream | 226437 | 47108351 ~ 47111306 (+) |
| LOC110532233 | samd11 | coding | upstream | 242342 | 47002142 ~ 47095401 (+) |
| LOC110532228 | LOC106572145 | coding | upstream | 625702 | 46657987 ~ 46712041 (+) |
| LOC110532242 | kiaa2013 | coding | downstream | 241400 | 47579342 ~ 47589218 (+) |
| LOC110533017 | LOC106572130 | coding | downstream | 288390 | 47626332 ~ 47627942 (+) |
| LOC110533018 | LOC106572129 | coding | downstream | 297428 | 47635370 ~ 47636413 (+) |
| LOC110532243 | mthfr | coding | downstream | 341598 | 47679540 ~ 47694148 (+) |
| LOC110532248 | LOC106572122 | coding | downstream | 648397 | 47986339 ~ 48023190 (+) |
| G811412 | NA | non-coding | upstream | 1951 | 47335480 ~ 47335792 (+) |
| G811409 | NA | non-coding | upstream | 3717 | 47333715 ~ 47334026 (+) |
| G811394 | NA | non-coding | upstream | 10067 | 47327423 ~ 47327676 (+) |
| G811382 | NA | non-coding | upstream | 23364 | 47314149 ~ 47314379 (+) |
| G811173 | NA | non-coding | upstream | 66397 | 47271125 ~ 47271346 (+) |
| G811416 | NA | non-coding | downstream | 15 | 47337957 ~ 47338180 (+) |
| G811437 | NA | non-coding | downstream | 13141 | 47351083 ~ 47351772 (+) |
| G811492 | NA | non-coding | downstream | 71471 | 47409413 ~ 47411226 (+) |
| G811668 | NA | non-coding | downstream | 196717 | 47534659 ~ 47534899 (+) |
| G811674 | NA | non-coding | downstream | 203496 | 47541438 ~ 47541832 (+) |
| G809685 | NA | other | upstream | 1202011 | 46134731 ~ 46135732 (+) |
| G807841 | NA | other | upstream | 2884666 | 44442662 ~ 44453077 (+) |
| G807677 | NA | other | upstream | 3141702 | 44195715 ~ 44196041 (+) |
| G805600 | NA | other | upstream | 4988957 | 42346176 ~ 42348786 (+) |
| G805451 | NA | other | upstream | 5005305 | 42332093 ~ 42332438 (+) |
| G812143 | NA | other | downstream | 644059 | 47982001 ~ 47982301 (+) |
| G812688 | LOC106572106 | other | downstream | 1207512 | 48545454 ~ 48570593 (+) |
| G813071 | NA | other | downstream | 1621807 | 48959749 ~ 48959991 (+) |
| G813074 | etbr2 | other | downstream | 1665377 | 48962187 ~ 49006710 (+) |
| G813139 | NA | other | downstream | 1777195 | 49115137 ~ 49115618 (+) |
