XLOC_027164 (tnnt2c)


Basic Information

Item Value
gene id XLOC_027164
gene name tnnt2c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12031958 ~ 12033866 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053534
GCATCCATGGAAAACATCTCAGTCTTTGCCACCAGCTGCAGTGTTCCTCAGTCATCCTCTCTTCTCTAAACCCTCAGAAGTAGCACCATGTGCGACACCGAAGAGTTTGTGGCAGAGTTCGAGGAGGAGGTGAAGGAGCAGGAagctgaggaagaggaggaagctGAGGAAGAGGTTAAAGAAGAGGCTGAGGAGAAAGAAGAAGTTGAGGAAGAACAAGAAGAAGCTGAGGAAGGAGACGAACCTGAAGAGACACATCAAGAAGAAGCAGACGATGAGCATGAAGCTGAAGAAGACACCAAACCCAAACCCAAGATGTTTGTTCCCAACATTATACCACCAAAGCTGCCTGACGGGGAGAAGGTGGACTTTGATGACCTCCACCGGAAGCGTGTGGAGAAGGATTTTAATGAACTGCAAAGCCTGATTAACCTGCACTTCACCACCAGGCAGAAGGAGGAGGATGAGCTGGTAGCGTTGAAGAACCGAATTGAACGTCGTCGGACCGACCGTGCTGATCAGCAACGGATCAGAACTGAGCGAGACCGTGAAAGACAAGCACGCCTCGCTGAAGAACGAGCCCGTCGTGAAGAGGAGGCCGCCAAATTGCGTGCCGAGGAAGATGCCAGGAAAAAGAAGATCCTTTCCAACAAGGGCTACGGCGGCTTCCTGCAGAAGGTGGATCAGAAGAAAGGAAAGAAGCTGACCGAACGTGAGAAGAAGACCAAATGTCTGCTAGAGCGTCGCAAGCCACTGAACATCGATCATCTCAACCAGGAGAAGCTGGGAGAGAAAGCTCTCGACCTGTGGAAGTGGCTCAATCAGCTCCACGCTGAGAAGTTTGAGTTGGGAGAGAAGCTAAAGTCGCAGAAGTATGAGATCAAGGTTTTGCGGAATCGAGTAAGTGACCATCAAAAGGGAACCAAGGTTGCGAAAACCACCAGGAAGTCCTGGaagtaaattaatcagattaatACACAAAACAGAGCCAAAAAGTCTTGCTTTGAACTTTTCAAGGACAACATTTAACGTTTTCTgattaatgtttattcatttctCATTGTGCTGTATGACTACTGTATGTGTCATTGGTTTTTATTGGGAATAATGTTTTGTCGCATGCAAGTCTCAAGCTCATTCTCTAAACATATGAAATGCTTTTATGTCTACAAGATTTACATTATGCAGAAATGCagtttattttctaatatttgaatgtatgactttttttctttcaacctttgcttaataattgtatattcATTTCACATTGTGCTGTATGACTTCTGTATGTGTAATCAATTTTTATTGGGAAAACCTATTGTTACATGCAAGTCATTCTGTAAACATTTTCAAAGCTTTTTTTGTTCACAAGATTTACATTATGCAGTAGAAATGCAGTTTATTTTCTATGATTTGACTGtgtgactttttatttattttatttatttattttatttatttataaagtgacaatgtacaacatgacatgttgtgccagagttagctataaagctaatttacatctgtagtccctgggcaggaagtaacaaatttaacagttataacaaatacaatgtacacttacagtacaataaatacaaCACATCGTCAATATAATGAAATCAAATCAATGgctgcatatttgattttgttttagccaaattttaagaacagttttaaaattattaaaagtgctgctctctctgacatacactggtattttatttccactttctttttctttcaaccTTTGCTTATTAACACAAGTGCTGACAAATATATTGAATTAAAGCAGTGGTTTCATTTTAGAAATTATGCATTATGTATTGACATCACCAAGACCTCTTTCAAGACTGAAATccacaaaatgtgtaaaaataaatgaatcaataaataaataaaaaaa

Function

symbol description
tnnt2c Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Acts upstream of or within sarcomere organization. Predicted to be part of troponin complex. Is expressed in mesoderm; musculature system; somite; and trunk mesenchyme. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030520-1 Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Acts upstream of or within sarcomere organization. Predicted to be part of troponin complex. Is expressed in mesoderm; musculature system; somite; and trunk mesenchyme. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

Ensembl:

ensembl_id ENSDARG00000032242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053534 True 1909 mRNA 0.39 1 12031958 12033866

Neighbor

gene id symbol gene type direction distance location
XLOC_027163 cry1a coding upstream 5451 12013043 ~ 12026507 (+)
XLOC_027162 NA coding upstream 81032 11946875 ~ 11950926 (+)
XLOC_027161 NA coding upstream 238175 11789799 ~ 11793783 (+)
XLOC_027160 NA coding upstream 259359 11761954 ~ 11772599 (+)
XLOC_027159 mkln1 coding upstream 301190 11690923 ~ 11730768 (+)
XLOC_027165 NA coding downstream 5783 12039649 ~ 12052670 (+)
XLOC_027166 NA coding downstream 30125 12063991 ~ 12065363 (+)
XLOC_027167 tmem178b coding downstream 77288 12111154 ~ 12239160 (+)
XLOC_027168 mkrn1 coding downstream 258408 12292274 ~ 12307834 (+)
XLOC_027169 tmem121b coding downstream 275110 12308976 ~ 12312976 (+)
XLOC_027158 NA non-coding upstream 403346 11628170 ~ 11628612 (+)
XLOC_027157 BX465862.5 non-coding upstream 465802 11566040 ~ 11566156 (+)
XLOC_027175 NA non-coding downstream 718688 12752554 ~ 12755202 (+)
XLOC_027176 NA non-coding downstream 779334 12813200 ~ 12819377 (+)
XLOC_027179 NA non-coding downstream 945646 12979512 ~ 12980325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_05315482_05316126 TNNT2C coding CI01000020 null 5315111 ~ 5316385 (-)
tiger barb (Puntius tetrazona) G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 unknown NC_056702.1 CM032071.1 5719012 ~ 5720250 (-)