G812684 (LOC106572106)


Basic Information

Item Value
gene id G812684
gene name LOC106572106
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48538027 ~ 48541698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU924553
GAACTGTTCAAGCGCTTCTGTATCGGCTTCACAAGTGTCAAGACCTCTGACCTTTtggccctcctctcccttttcaCCCTTTTCTCCACGAGGACCCGGTTTGCCAGGAGGACCCGTGACCCCAGGAGCTCCAGGTATGTCGGAGGTACAGGTGCAGGCATAGGCAGGTGCGGGGCAGCTCTCCTCATCCCTCAGGCCTGGCAAATCACAGCAGGTGTCCTCTAATGCCCAGGTGGTGTTGCACACAATCTCAAAGGACTGTAGCTGGAACGGGGCAGAGCCGCTGTGTGGTCCACGGGTCTTCATCAGTTTGCCCAGTGTCTCAAAACCATCAGTGGGCAGAGTCCCCAGTGGCCGTGCGGGCCTCTCACCCACATGCTGGCAGTCCACAGACAGGGATACGCTCACCTGGCTGATAGACAGGTGGATCTGCCAATCACAggacagaag
>TU924551
TCCCACCAAGAGGATTGTACCCCAGTGATCTGTTTACATCTACAatcaatccccgagctgacaaggtaaacatcggtcgttctgcccctgagcaaggcagttaacccactgttccccgggcgccgaagacgtggatgtcgattaaggcagccccccgcacctctctgattcagaggggttgggttaaatgtggaagacacatttcagttgaaggcattcagttgtacaactgacaaggtatccccctttcccaatgcTGATGGTATACAGACCTGTGGGGTGGAGAATGGAGACTGCAGCTCCCTCTACAGTGTCGAGGCGGGAGTGCACACTGATGCGGTACACAGTCTCTGGCTCCAGCTCAGTgaaacagtagctgctgcttGATGCATCCACTATCTCCTGCTTTGTCTGCTTGTCTTTGAAAGACTGGATGGCAATGCGGTAACCGCTGACTGCTGAAACAGGCCTCCAAGACACGCAGATACTGGAGTGATCAGACCTCATCACACTGACACTGCTCACTCGCAGACTGACTGGAGGAACAGACATGGAGAGACAACTGACGGGATGTCTGCGTACACTAGAGCACGCGAGACCATGCATTCACAGGTGATAGACTATTAATGACAGTTGGTGTGTAAGTGACTCACTGGTCTTGCCCTGTGCGGAGGCGCTCCCTCCCTCTCGGTTGCGGTACTCCGCAGTGACCAGGATGCTGTAGCGTGTGTCAGGTAGCAGGGTCTGCAGCAATGTTCGTCTCTCGCTGCCTGAAACCAACACagtgctctcctgtgtctctcctcccATCAGGGCGGTGTAGGAGACATGGTATTGCAGTACATGGGCGTTGGGAGGAACCCAGCTCACCAGGAGACTGACTGCAGTCTCCTCTGAGATGGACACACTGGAAGGGCCGCCACCTGACAAGGTGCTGTATCGTATAGCCACTGCCTCACTCTGTGCTCCATCGGCGTAGAGGGCAGACAGTGAAATCTGATACTCCTTATCGTCCTG

Function

NR:

description
collagen alpha-1(XX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU924553 False 450 lncRNA 0.58 4 48538027 48538877
TU924551 True 1017 lncRNA 0.54 4 48540338 48541698

Neighbor

gene id symbol gene type direction distance location
LOC110532258 LOC106572114 coding upstream 134024 48400637 ~ 48404003 (+)
LOC110532257 LOC106572113 coding upstream 143928 48386767 ~ 48394099 (+)
snphb LOC106572120 coding upstream 278690 48224647 ~ 48259337 (+)
ntsr1 LOC106572121 coding upstream 379063 48104332 ~ 48158964 (+)
LOC110532248 LOC106572122 coding upstream 514837 47986339 ~ 48023190 (+)
taf13 taf13 coding downstream 39545 48581243 ~ 48582509 (+)
LOC110531191 LOC106566483 coding downstream 74625 48616323 ~ 48617448 (+)
LOC118966185 NA coding downstream 77285 48618983 ~ 48620336 (+)
si:rp71-17i16.5 LOC106572104 coding downstream 84621 48626319 ~ 48636018 (+)
lamb2l LOC106572102 coding downstream 95839 48637537 ~ 48698384 (+)
G812683 NA non-coding upstream 3156 48534571 ~ 48534871 (+)
G812613 NA non-coding upstream 102368 48426284 ~ 48435659 (+)
G812555 NA non-coding upstream 208200 48329596 ~ 48329827 (+)
G812382 NA non-coding upstream 251601 48278177 ~ 48286426 (+)
G812101 NA non-coding upstream 505909 48029315 ~ 48032118 (+)
G812951 NA non-coding downstream 200104 48741802 ~ 48742338 (+)
G812966 NA non-coding downstream 254605 48796303 ~ 48796775 (+)
G813047 NA non-coding downstream 368478 48910176 ~ 48910471 (+)
G813052 LOC106575331 non-coding downstream 373578 48915276 ~ 48915608 (+)
G812143 NA other upstream 555726 47982001 ~ 47982301 (+)
G809685 NA other upstream 2402295 46134731 ~ 46135732 (+)
G807841 NA other upstream 4084950 44442662 ~ 44453077 (+)
G807677 NA other upstream 4341986 44195715 ~ 44196041 (+)
G805600 NA other upstream 6189241 42346176 ~ 42348786 (+)
G812688 LOC106572106 other downstream 3756 48545454 ~ 48570593 (+)
G813071 NA other downstream 418051 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 461621 48962187 ~ 49006710 (+)
G813139 NA other downstream 573439 49115137 ~ 49115618 (+)
G815428 NA other downstream 2254516 50796214 ~ 50800381 (+)

Expression


Co-expression Network