G812969


Basic Information

Item Value
gene id G812969
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48942199 ~ 48943429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU924878
TGTGTCTTATTTTCACCATCAAAGCCTCTGTTTTTGTGCGGTTCACTGTGACCATGTGGTGTCCAGGCAACCGTCACTGTGTCACACCCGCGAGTAGCATTACTGTGTTATAGTGAGTCAAGTATTGTTGCTTTTCCTTCCAAAAGAAATGAGTATTTAAATAATTTATGTTATCTCTGTTGTTTTATCCCCACAGTGCTTCTCCTACAGATGTTTATTTGTGTTGTGTGGGTTGAGCTGtacagagtcaggtttgtggtGGTGTTGCCCTGTCGTGTTGACACAGGCCTGTTATCTCTCTATGATGCTGTGCTATGACGTGTTTCCATGGTGCGTAACCACGGTGATGGTGTTAGCTGATGATCTCTGACTGTATCAAGtgcactgtgtgtctgtgtgtcttgaCTCCTGTCTCAACGAGGGAGGCTACAATATGTGTCTGAATATCACAGAGGGGTTCAAATGGGAACGAAAGTCTGTCACAATTCTTTTAATTTCAGGTTGATGTTTGAAGCCATGAAGCCAGATGAGTTTGCTttggttaaacacacacactaattatATCACAGCACATCCACATCTGGAGAAGGAGATTCCTATACATGGTACAGTATGGATGAGGAGAGGAACAGCTGTGCCAATATGAAGTCTGTTGCTGAACCTCAATTCTCCTGAAAACCAATACAAATAATCCAAATCCTAATAGGACACTCCCATGacttgtctgttgtgtgtgtggcaTCTTCCATGTTTTAACTGACAATCAGCGGGAACTGTTTTACTCCTATAACGTGAGGTGATCATCAGCCCAAACAGTTAGTTTGATTAGGTTATATTTCAACAGGGAAATATTGATATCCAGACCTCTTAACTCAGCTTTGGTACTGACCAGCCAGAAGAGAGGTGCCATTTAGTCAGCCAGACCTGACAGAGCTGATCACTTCCCCCAGATGtcatgttctgtAGCACCAGAAACTGAATGAGGAAACAAGTTTACTAATGGCCTGATTTGTGGATCAATGTGCAGAAGAGAGTGCCAGGCGTTTTGACAGAGCTCTGGTCTGACAGAGAGATGCCTGGATGGAATCCTGTGGTTGTTTCTGATTGTGTTCACTTGTACAGTCAAACATTGTGAAAGTAATGTGATACAGTACACAGGCAGAGTTGTGGCAGTGACTCCAGTACAGTAGTTCAGTGCCTATAAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU924878 True 1210 lncRNA 0.43 2 48942199 48943429

Neighbor

gene id symbol gene type direction distance location
klhdc8b LOC106572099 coding upstream 6867 48831069 ~ 48935332 (+)
si:dkey-32e6.3 LOC106572098 coding upstream 152454 48782956 ~ 48789745 (+)
usp19 NA coding upstream 159460 48747659 ~ 48782739 (+)
lamb2 LOC106572101 coding upstream 194675 48699212 ~ 48747524 (+)
lamb2l LOC106572102 coding upstream 243815 48637537 ~ 48698384 (+)
LOC110532277 LOC106572094 coding downstream 45013 48988442 ~ 48994535 (+)
LOC110532278 LOC105027762 coding downstream 51206 48994635 ~ 48998285 (+)
LOC110532282 LOC106572092 coding downstream 69734 49013163 ~ 49060073 (+)
LOC110532283 LOC106572090 coding downstream 120259 49063688 ~ 49081175 (+)
LOC110532284 LOC106572089 coding downstream 142395 49085824 ~ 49097702 (+)
G812968 NA non-coding upstream 2612 48939159 ~ 48939587 (+)
G813060 NA non-coding upstream 11772 48930216 ~ 48930427 (+)
G813052 LOC106575331 non-coding upstream 26591 48915276 ~ 48915608 (+)
G813047 NA non-coding upstream 31728 48910176 ~ 48910471 (+)
G812966 NA non-coding upstream 145424 48796303 ~ 48796775 (+)
G813074 etbr2 non-coding downstream 18758 48962187 ~ 49006710 (+)
G813076 NA non-coding downstream 24335 48967764 ~ 48975385 (+)
G813099 NA non-coding downstream 67905 49011334 ~ 49011612 (+)
G813100 NA non-coding downstream 68217 49011646 ~ 49011948 (+)
G813125 NA non-coding downstream 138895 49082324 ~ 49082584 (+)
G812688 LOC106572106 other upstream 371606 48545454 ~ 48570593 (+)
G812143 NA other upstream 959898 47982001 ~ 47982301 (+)
G809685 NA other upstream 2806467 46134731 ~ 46135732 (+)
G807841 NA other upstream 4489122 44442662 ~ 44453077 (+)
G807677 NA other upstream 4746158 44195715 ~ 44196041 (+)
G813071 NA other downstream 16320 48959749 ~ 48959991 (+)
G813139 NA other downstream 171708 49115137 ~ 49115618 (+)
G815428 NA other downstream 1852785 50796214 ~ 50800381 (+)
G815610 NA other downstream 2135018 51078447 ~ 51078942 (+)

Expression


Co-expression Network