XLOC_027168 (mkrn1)


Basic Information

Item Value
gene id XLOC_027168
gene name mkrn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12292274 ~ 12307834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053537
GCTAAGGCTTCAACATAAACAGCAATGGCGGAGGCAGCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATTTCATGCACGGGCTTTGCAAAGAGGGTGAGAACTGTCGATATTCACACGACCTCAGCAGCTGCAAGCAAACCATGATCTGCAAGTTCTTCCAAAAGGGATGCTGTGCTTTCGGGGACCGTTGCAGGTATGAACATACCAAACCTTCCAAGCAAGACGAAGTCCCCAGTTCGAAGCCGTCGATGCCGCTGACCGCTGCTCCCCTTGCTGGCACTCCTGAACCCGTGTCTGATGGGCCAGGTGGCACGACCGGCGCCCAGGAGAAGCCCCAAGGCTCAGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTCGTGCCAGGGCAGCCCTACTGCGGGAGGGCCGACCCAGTGCTGTGTGAGGGGCCCGGTCCTCTCATCGAAGAAGAGTACGAGAAAGAACAAGCCAACAAAGAAATGAAGAAGCAGCTTTGCCCATACGCCGCTGTTGGCGAATGTCGCTATGGCCTTAACTGTGCCTACCTCCACGGCGACGTTTGCGACATGTGCGGCCTACAGGTGCTCCACCCGTCCGACACCTCTCAGCGCTCGCAACACATCAGGGCTTGCATCGAAGCTCACGAGAAGGACATGGAAATCTCGTTTGCCATCCAGCGTAGCAAGGACATGATGTGCGGCGTGTGTATGGAGGTGGTGTTCGAGAAAACCAACCCTAGCGAACGCCGTTTCGGCATCCTCTCCAACTGCTGCCACTGCTACTGCCTCAAGTGCATCAGGAAATGGCGAAGCGCCAAGCAGTTCGAGAGCAAGATCATAAAGTCCTGCCCAGAGTGTCGAATTACATCAAACTTTGTCATACCAAGCGAATACTGGGTGGAGGACAAGGAGGAAAAGCAGCAACTCATTCAGAAGTACAAGGATGGCATGGGAACTAAACCATGCCGATATTTTGATGAAGGCCGTGGGACCTGTCCGTTTGGAGCCAACTGCTTTTACAAGCACGCTTTCCCTGACGGGCGTCTGGAAGAGCCTCAACCCCAGAGGAGACAGAACGGCTCCAATGGAAGAAACCGGAACACCAGACGGACGCATCTCTGGGATCTTTTAGACGAGCGGGAGAACAGCGACTCCTTCGACAACGAAGACGAGGAGATGGTGAGGTTCGAGCTGAGCGAGATGCTCCTAATGCTTCTGGCTGCGGGAACCGACGACGACGTCACCGACTCCGAGGACGAGTGGGATTTGTTCCACGAAGAGCTGGACGATTACTATGAGCTGTACCTATAGCAGGCCTCGCTCCGTCCTTCGCTCATTTTCTCCTAAACTAACCCTCATCCCTATTTACTCGATTTCAATCCCTGTTAGAAACTAGACAGGACTGTCTCGTGTGACTGATGGGCAGTAGCGTCTTCCCCCTGTGTTGTGGCAGTGCCTTTCAGCAggccattaaaaaaacaaaacaaattcattTCAATGAATCTAAAACACACGTCAAACGACATTAAAAAATAGCTCTCaggctaaaaaaaaagaaaacaagcaaaCCTTTTCTAGTAAGCCTTCTCCATTCTGTGAGTCTGTCCATGTCTGGTTAACGTACTAGAAAAAGTTTaaagaggaaaaaacaaataattgaaaAACAAGAAAGGACACtaagttatatataaatatataattggaAAGATCTAGCTTGCCGGGTTTATCTCGGGAGTGGGTTTAACATGTTTATCATTGACTGTGAGGACACAGCAACTGTGTCTGACTTCACTAACTGGTGGCTGTTGATGCttctgatatttttaaaaaatatccttCATCATGCACTGATTCTGACTGGGTGGGAGGTGGTGGTTATGGTGGTGGTCTCGGAGCTTCCTCGATTTCACAAATGCACTCATTCCCAAGGGCGACTCATAGCATTTATTCCTAATTGTAAATGTCCATTTGTTCTTCCCTCTATTCTCTTCCACCGAGTTGTTTTTTTGTACTCGTTGAGCTGTACCTGATTAGCTGTGGTATCCTGTGGGACGTCCCTACGAACTGAGTGCGCCCATTCTTTGTGAATCTGGACTTCCAAATAGCCGACTTAATTGCATTCAAATACGAAGCTGAATGTTCATCAGTTTAACTGTCTAATAATTGTAAATCTGTTTCGCTTCAGTGAGTATTGCATATTAAGCTCAGCTGGCAGTAGTCGAACCACAAACACCCAATTGTTATTCGGTTCTTGTCGAACTTGGTTGATATGCATATGTTTATACAGAAATGTGCTCGTTTTCTATGGTTCAGAACCATCCAATGTAACTTGAAATTAAAGTTTATTATC
>TCONS_00053538
AACATAAACAGCAATGGCGGAGGCAGCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATTTCATGCACGGGCTTTGCAAAGAGGGTGAGAACTGTCGATATTCACACGACCTCAGCAGCTGCAAGCAAACCATGATCTGCAAGTTCTTCCAAAAGGGATGCTGTGCTTTCGGGGACCGTTGCAGGTATGAGACACAATGATGTAATGTGTTGCATTATAATGTGCACCAAAACATCCGCTGGCGCTCATGACCAGATCTGAACAGATCTTGCATAACATCAAAGAATAACCACAAAGGCCTAGAGCAGCGTTTTCTTTGCACGGCTTACCTACTGCATCAGCTCAGTTTTCATTCAATTTGCATTGTGCCCTAGGTATGAACATACCAAACCTTCCAAGCAAGACGAAGTCCCCAGTTCGAAGCCGTCGATGCCGCTGACCGCTGCTCCCCTTGCTGGCACTCCTGAACCCGTGTCTGATGGGCCAGGTGGCACGACCGGCGCCCAGGAGAAGCCCCAAGGCTCAGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTCGTGCCAGGGCAGCCCTACTGCGGGAGGGCCGACCCAGTGCTGTGTGAGGGGCCCGGTCCTCTCATCGAAGAAGAGTACGAGAAAGAACAAGCCAACAAAGAAATGAAGAAGC
>TCONS_00053539
AGCAATGGCGGAGGCAGCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATTTCATGCACGGGCTTTGCAAAGAGGGTGAGAACTGTCGATATTCACACGACCTCAGCAGCTGCAAGCAAACCATGATCTGCAAGTTCTTCCAAAAGGGATGCTGTGCTTTCGGGGACCGTTGCAGGTATGAGACACAATGATGTAATGTGTTGCATTATAATGTGCACCAAAACATCCGCTGGCGCTCATGACCAGATCTGAACAGATCTTGCATAACATCAAAGGTAATGTAATCTGTATTTCTGTGCTGGAGAGCGTAACACGTGAGCGGGTTTAAATGCAGTAGCGGTAAGCAGGGCTTCTGAGAAGCGTTGTGTGTTGCTTCATTACATGCCTGCGACATCTGAGACGCggaatttttttgtaaacaagTTGTTGGGTTAGTCGCTTTCTTAAAGAGGCAGTTTATCCAAGTCATTATTTAGTTCTTCCTAAATCTGTAGGGGTTTTTGTCGAAAACAGGTTTTTAACCCTCACCCCATTTACGTTTGAAgagtttaacattttaaaaataaaatatggcaTAAAAGAATACATTTCTTAGCAtat
>TCONS_00053540
CAGCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATTTCATGCACGGGCTTTGCAAAGAGGGTGAGAACTGTCGATATTCACACGACCTCAGCAGCTGCAAGCAAACCATGATCTGCAAGTTCTTCCAAAAGGGATGCTGTGCTTTCGGGGACCGTTGCAGGTATGAACATACCAAACCTTCCAAGCAAGACGAAGTCCCCAGTTCGAAGCCGTCGATGCCGCTGACCGCTGCTCCCCTTGCTGGCACTCCTGAACCCGTGTCTGATGGGCCAGGTGGCACGACCGGCGCCCAGGAGAAGCCCCAAGGCTCAGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTCGTGCCAGGGCAGCCCTACTGCGGGAGGGGTGAGTGTGGCAGGGAAAGATGCTCAGCCAAGACAATCTGTGAAAACATGGTGCCAATAGATAAGCCAAGCAGTTGGTGTACAATATGAAGGCTGGTATTATGATCAGCTTACTACTTTTGTGGCGTTCTTGTCCTCACTTCCTGTtgaataaatttgattaaatgtGTCAGGATTTTATTACTCTGATTCGAATTGAATTGGATTTCTTTTTTTCCAATTCAATCATTAATTACTGTTCCATCTGTTAACATTTAGTGAAGTAACAGTTAACAGACAGTTGTTGTTATTCTAGTTTAATTTAGATATTCTGTGCATTAGTTCACTTTTTGATTTAGGATTTATTGTGATCATAAACTAATAAATTTAATcttaaaacattgtcaaaataaaCATGAACCATTTTATCT
>TCONS_00053541
GCGGCAGCGTCAACAGCGGCTCCAGCAGTTATCGGAGGCTGGACGAAGCACGTAACCTGCAGGTATGAACATACCAAACCTTCCAAGCAAGACGAAGTCCCCAGTTCGAAGCCGTCGATGCCGCTGACCGCTGCTCCCCTTGCTGGCACTCCTGAACCCGTGTCTGATGGGCCAGGTGGCACGACCGGCGCCCAGGAGAAGCCCCAAGGCTCAGGGGCAGTGGACTGGGTCAATGCCGCCGAGTTCGTGCCAGGGCAGCCCTACTGCGGGAGGGCCGACCCAGTGCTGTGTGAGGGGCCCGGTCCTCTCATCGAAGAAGAGTACGAGAAAGAACAAGCCAACAAAGAAATGAAGAAGCAGCTTTGCCCATACGCCGCTGTTGGCGAATGTCGCTATGGCCTTAACTGTGCCTACCTCCACGGCGACGTTTGCGACATGTGCGGCCTACAGGTGCTCCACCCGTCCGACACCTCTCAGCGCTCGCAACACATCAGGGCTTGCATCGAAGCTCACGAGAAGGACATGGAAATCTCGTTTGCCATCCAGCGTAGCAAGGACATGATGTGCGGCGTGTGTATGGAGGTGGTGTTCGAGAAAACCAACCCTAGCGAACGCCGTTTCGGCATCCTCTCCAACTGCTGCCACTGCTACTGCCTCAAGTGCATCAGGAAATGGCGAAGCGCCAAGCAGTTCGAGAGCAAGATCATAAA
>TCONS_00053542
GTTTCGGCATCCTCTCCAACTGCTGCCACTGCTACTGCCTCAAGTGCATCAGGAAATGGCGAAGCGCCAAGCAGTTCGAGAGCAAGATCATAAAGTCCTGCCCAGAGTGTCGAATTACATCAAACTTTGTCATACCAAGCGAATACTGGGTGGAGGACAAGGAGGAAAAGCAGCAACTCATTCAGAAGTACAAGGATGGCATGGGAACTAAACCATGCCGATATTTTGATGAAGGCCGTGGGACCTGTCCGTTTGGAGCCAACTGCTTTTACAAGCACGCTTTCCCTGACGGGCGTCTGGAAGAGCCTCAACCCCAGAGGAGACAGAACGGCTCCAATGGAAGAAACCGGGTAAGGCTTCAACTCGATGCTAGTGCCAAATAGCATAAAAGCATATCATATTTACTTTTACAATGTGCAACGGAGCCATTAATGGACTCTGTATTGCAGAACACCAGACGGACGCATCTCTGGGATCTTTTAGACGAGCGGGAGAACAGCG
>TCONS_00057648
GTTTCGGCATCCTCTCCAACTGCTGCCACTGCTACTGCCTCAAGTGCATCAGGAAATGGCGAAGCGCCAAGCAGTTCGAGAGCAAGATCATAAAGTCCTGCCCAGAGTGTCGAATTACATCAAACTTTGTCATACCAAGCGAATACTGGGTGGAGGACAAGGAGGAAAAGCAGCAACTCATTCAGAAGTACAAGGATGGCATGGGAACTAAACCATGCCGATATTTTGATGAAGGCCGTGGGACCTGTCCGTTTGGAGCCAACTGCTTTTACAAGCACGCTTTCCCTGACGGGCGTCTGGAAGAGCCTCAACCCCAGAGGAGACAGAACGGCTCCAATGGAAGAAACCGGAACACCAGACGGACGCATCTCTGGGATCTTTTAGACGAGCGGGAGAACAGCGACTCCTTCGACAACGAAGACGAGGAGATGGT
>TCONS_00053543
CGTCTAGACTGTTATTATCAAATTGTGATCTATTTGTTTAGCTAATCTGTTTTTTCCACCTTCTCAGAACTAAACCATGCCGATATTTTGATGAAGGCCGTGGGACCTGTCCGTTTGGAGCCAACTGCTTTTACAAGCACGCTTTCCCTGACGGGCGTCTGGAAGAGCCTCAACCCCAGAGGAGACAGAACGGCTCCAATGGAAGAAACCGGAACACCAGACGGACGCATCTCTGGGATCTTTTAGACGAGCGGGAGAACAGCGACTCCTTCGACAACGAAGACGAGGAGATGGT

Function

symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020213-1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

Ensembl:

ensembl_id ENSDARG00000041665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053537 False 2383 mRNA 0.49 8 12292274 12307834
TCONS_00053538 False 702 nonsense_mediated_decay 0.54 4 12292285 12301995
TCONS_00053539 False 632 lncRNA 0.44 2 12292294 12293669
TCONS_00053540 False 814 lncRNA 0.45 3 12292308 12298977
TCONS_00053541 False 710 mRNA 0.59 4 12292310 12304701
TCONS_00053542 False 501 lncRNA 0.49 3 12304608 12306634
TCONS_00057648 False 433 lncRNA 0.52 4 12304608 12306665
TCONS_00053543 True 295 lncRNA 0.49 2 12306272 12306665

Neighbor

gene id symbol gene type direction distance location
XLOC_027167 tmem178b coding upstream 53114 12111154 ~ 12239160 (+)
XLOC_027166 NA coding upstream 226911 12063991 ~ 12065363 (+)
XLOC_027165 NA coding upstream 239604 12039649 ~ 12052670 (+)
XLOC_027164 tnnt2c coding upstream 258408 12031958 ~ 12033866 (+)
XLOC_027163 cry1a coding upstream 265767 12013043 ~ 12026507 (+)
XLOC_027169 tmem121b coding downstream 1142 12308976 ~ 12312976 (+)
XLOC_027170 pimr214 coding downstream 25334 12333168 ~ 12361683 (+)
XLOC_027171 pimr170 coding downstream 40734 12348568 ~ 12352645 (+)
XLOC_027172 pimr169 coding downstream 57941 12365775 ~ 12369666 (+)
XLOC_027173 lmo3 coding downstream 304311 12612145 ~ 12679293 (+)
XLOC_027162 NA non-coding upstream 341348 11946875 ~ 11950926 (+)
XLOC_027161 NA non-coding upstream 498491 11789799 ~ 11793783 (+)
XLOC_027160 NA non-coding upstream 519675 11761954 ~ 11772599 (+)
XLOC_027175 NA non-coding downstream 444720 12752554 ~ 12755202 (+)
XLOC_027176 NA non-coding downstream 505366 12813200 ~ 12819377 (+)
XLOC_027179 NA non-coding downstream 671678 12979512 ~ 12980325 (+)
XLOC_027181 NA non-coding downstream 672862 12980696 ~ 12985047 (+)
XLOC_027182 NA non-coding downstream 689286 12997120 ~ 13024021 (+)

Expression


Co-expression Network