XLOC_027170 (pimr214)


Basic Information

Item Value
gene id XLOC_027170
gene name pimr214
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12333168 ~ 12361683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053545
tgcagttgtttattttttaacagacACCATTTTAAGGCATTACGAAATGGGTGACAAGCTGGGCAAAGGTGGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTGAGGTTGCTGTGAAATGTACTGTCAAGTCACCGAAGATGAAGGAACTCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATAATCCAACTCCTAGACTGGGAGGACAATGATGGCCACTACATTATAATCATGGAGCGACCCATACCTTGTATGGACTTGCTTGGCTTCTTACGCCACAAGGATGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTTATGCTGTGAGCGTTTGCTTTGATCGCGGTGTCTTCCATCGGGACATAAAGCTTGAAAACCTCCTAGTTAATCCTGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGTAAAGAAATCAGGCTACAAAGTCTTCTGTGGAACAAGAACATATTTCCCTCCGGAGTACGAATTGCATGGCAGGTACCATGCACAGCCGGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTGGGGCTTTACCCACTGTCTCCGACCACTCCTTGATCAGGGACTATCTTTGGTCTAGCCCTGGCCTGTCAATAGAATGCTGCCAGATGATCTGCGGTTGTCTACAGCCAAACCCAGATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTATGAAGCCTAAAGCTGAATGGCTTTCATTTTTGTTGATCAT
>TCONS_00053546
GTGGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTGAGGTTGCTGTGAAATGTACTGTCAAGTCACCGAAGATGAAGGAACTCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATAATCCAACTCCTAGACTGGGAGGACAATGATGGCCACTACATTATAATCATGGAGCGACCCATACCTTGTATGGACTTGCTTCACTTCTTACGCCACAAGGATGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTCATGCTGTGAGCGTTTGCTTTGATCGCGGTGTCTTCCATCGGGACATAAAGCTTGAAAACCTCCTGGTGAATCCAGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATTGTAAAGGATTCCGGCTACAAAGTCTTCTGTGGTACAAGAAAATATTTCCCTCCGGAGTATGAATTGCATGGCAGGTACCATGCACAGCCAGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTGGGGCTTTACCCACTGTCTCCGACCACTCCTTGATCAGGGACTATCTTTGGTCTAGCCCTGGCCTGTCAATAGAATGCTGCCAGATGATCTGCGGTTGTCTACAGCCAAACCCAGATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAGAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGctctttgtattgtattgttgcCTTGTCATCTTCTTTAATAGTGCAGGGCAACTTACATATGAGTGCTTTTGTTGATTAATTAATTTGTCATGAATGT
>TCONS_00053547
AGCGAGTAAAGAAGAAAAGGACGTCTGGAAGTCTAGTAGAGCTTCTGCTTCAGAAGACCATGTCCCTGCTGCTGAGCAGCTAGAGGAGGACGACACAGAAAATGACACCATTTTAAGGCATTATGAAATGGGTGACAAGCTGGGCAAAGGTGGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTGAGGTTGCTGTGAAATGTACTGTCAAGTCACCGAAGATGAAGGAAATGACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATAATCCAACTCCTAGACTGGGAGGACAATGATGGCCACTACATTATAATCATGGAGCGACCCATACCTTGTATGGACTTGCTTGGCTTCTTACGCCACAAGGATGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTTATGCTGTGAGCGTTTGCTTTGATCGCGGTGTCTTCCATCGGGACATAAAGCTTGAAAACCTCCTAGTTAATCCTGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGTAAAGAAATCAGGCTACAAAGTCTTCTGTGGTAAGTGTTATGAACTTTGTTGTCATAAAAACCA
>TCONS_00053548
GCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATAATCCAACTCCTAGACTGGGAGGACAATGATGGCCACTACATTATAATCATGGAGCGACCCATACCTTGTATGGACTTGCTTGGCTTCTTACGCCACAAGGATGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTTATGCTGTGAGCGTTTGCTTTGATCGCGGTGTCTTCCATCGGGACATAAAGCTTGAAAACCTCCTAGTTAATCCTGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGTAAAGAAATCAGGCTACAAAGTCTTCTGTGGAACAAGAACATATTTCCCTCCGGAGTACGAATTGCATGGCAGGTACCATGCACAGCCGGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTGGGGCTTTACCCACTGTCTCCGACCACTCCTTGATCAGGGACTATCTTTGGTCTAGCCCTGGCCTGTCAATAGAATGCTGCCAGATGATCTGCGGTTGTCTACAGCCAAACCCAGATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAAAAACAACTCAGCAACCCTAGCACATCTGAGGACTGCTGCATTGGATTGCTCTTTGTATTATATTGTTGCCTTGTCATCTTCTTTAATAGTGCAGGGCAACTTACATATGATTACCTTTGTTGATTAATTAATATGTCATGAATGTTTTGAATGTattgtcattatattattattatacacatatGCAAATGCACTATATATGTCATGTGTGTTTCTTATATACTGGTGAATTATTAAAGCATCATAAAATC
>TCONS_00053550
GGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATAGACTTGAGGTTGCTGTGAAATGTACTGTCAAGTCACCGAAGATGAAGGAACTCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATAATCCAACTCCTAGACTGGGAGGACAATGATGGCCACTACATTATAATCATGGAGCGACCCATACCTTGTATGGACTTGCTTGGCTTCTTACGCCACAAGAATGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTCATGCTGTGAGCGTTTGCTTTGATCGCGGTGTCTTCCATCGGGACATAAAGCTTGAAAACCTCCTGGTGAATCCAGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGTAAAGAAATCAGGCTACAAAGTCTTCTGTGGAACAAGAACATATTTCCCTCCGGAGTACGAATTGCATGGCAGGTACCATGCACAGCCGGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTGGGGCTTTACCCACTGTCTCCGACCACTCCTTGATCAGGGACTATCTTTGGTCTAGCCCTGGCCTGTCAATAGAATGCTGCCAGATGATCTGCGGTTGTCTACAGCCAAACCCAGATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAAAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGCTCTTTGTATTATATTGTTGCCTTGTCATCTTCTTTAATAGTGCAGGGCAACTTACATATGATTACCTTTGTTGATTAATTAATTTGTCATGAATGTTT
>TCONS_00053551
aGGTTGCTGTGAAATGTACTGTCAAGTCACCGAAGATGAAGGAACTCACAGTGAATGCTGCCAGATGATCTGCGGTTGTCTACAGCCAAACCCAGATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAAAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGCTCTTTGTATTATATTGTTGCCTTGTCATCTTCTTTAATAGTGCAGGGCAACTTACATATGATTACCTTTGTTGATTAATTAATTTGTCATGAATGTTTTGA

Function

symbol description
pimr214 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-63 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.
ZDB-GENE-141219-38 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000095461 ENSDARG00000103365 ENSDARG00000104625

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053545 False 857 mRNA 0.48 5 12333168 12360465
TCONS_00053546 False 911 mRNA 0.48 6 12333236 12336573
TCONS_00053547 False 663 mRNA 0.47 5 12340655 12342586
TCONS_00053548 False 917 mRNA 0.44 4 12342173 12344639
TCONS_00053550 False 911 mRNA 0.48 6 12358822 12361680
TCONS_00053551 True 312 mRNA 0.42 3 12358958 12361683

Neighbor

gene id symbol gene type direction distance location
XLOC_027169 tmem121b coding upstream 20192 12308976 ~ 12312976 (+)
XLOC_027168 mkrn1 coding upstream 25334 12292274 ~ 12307834 (+)
XLOC_027167 tmem178b coding upstream 94008 12111154 ~ 12239160 (+)
XLOC_027166 NA coding upstream 267805 12063991 ~ 12065363 (+)
XLOC_027165 NA coding upstream 280498 12039649 ~ 12052670 (+)
XLOC_027172 pimr169 coding downstream 4092 12365775 ~ 12369666 (+)
XLOC_027173 lmo3 coding downstream 250462 12612145 ~ 12679293 (+)
XLOC_027174 AL954848.1 coding downstream 340757 12702440 ~ 12724404 (+)
XLOC_027175 NA coding downstream 390871 12752554 ~ 12755202 (+)
XLOC_027176 NA coding downstream 451517 12813200 ~ 12819377 (+)
XLOC_027162 NA non-coding upstream 382242 11946875 ~ 11950926 (+)
XLOC_027161 NA non-coding upstream 539385 11789799 ~ 11793783 (+)
XLOC_027160 NA non-coding upstream 560569 11761954 ~ 11772599 (+)
XLOC_027179 NA non-coding downstream 617829 12979512 ~ 12980325 (+)
XLOC_027181 NA non-coding downstream 619013 12980696 ~ 12985047 (+)
XLOC_027182 NA non-coding downstream 635437 12997120 ~ 13024021 (+)

Expression


Co-expression Network