G813822


Basic Information

Item Value
gene id G813822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49729408 ~ 49740600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU925803
TCTATTGATTGGACCtgatttggaaagaaacacacctgactatataaggtcccacagttgacagtgcatgtcagagaaaaaactaagccatgggatcaaaggaattgtccttagagctttgagacaggattgtgttgtggcacagatctggggaagggtaccaaaaaagttctgcagcattgaaggtccccaagaacacagtggccttcatcattcttaaatgggagaagtttggaaccaccaagactcttcctagagctggctgcccggccaaactgagcaatcgggggagaagggccttggtcagggaggtgaccaagaatacgatggtcactctgaaagaactcctgagttcctctgtggagatgggataaccttccagaaggacaaccatctatgcaggactccaccaatcaggcctttatggtagagtggccagacagatgccactcctcagtaaaaggcacatgacagccctcttggagtttgtaAAATAGGCACCtatagactctcagaccatgtgaaacaagattctctggtctgatgaaaccaaggttgaactcctcggcctaaatgccaagcgttacatcacgtctggaggaaacctggcaccatccctacagtgatgcgcggtggcaccatccctacggtgaagcgtggtggcagcatcatcccgtggggctgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaacagagcaaagtacagagagatccttgatgaaaacctgctccagagtgcttaggacctcagactgcggcAGAGGtttaccttctaacaggacaatgaccctacgcacacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccggaatttaacctgatcaaacatctctggagagacctgaaaatagctgtgcagcgacactccccatctaacctgacggagcttgagaggatctgcaaagaaaaatgagagaaactccccaaatacaggtgtgccaaccttgtagcgtcatacccaagaagactcgaggctgtaaccactgccaaaggtgcttcagcagagtactgagtaaagggtctagatacttatgtacatgtgatatttcagtttttaaacctgtttttactttcattatggggtattgtatgtaaatgtagaataaggctgtaacgtaacaatgtggaaaaagtcaagggatctgaatactgaATGCACTAtgttttaattgaaatgtacgGCTTGCATCTTATCCGCTCATTCTTCCCTcgtcatagtttgtacatctcaattgttataTTGCTCATATAGGTCTATCTTATTAATCATTTTAGGCAGTGCTGgaattatttcattgttttgcttACTTTGTGTATTATAATTAGCTCTTGTGCCTTTCTCCTCGAGGAGCGAATACTATATGTTGTTGGGCCTGTAACCATGTTTGCCAGTGACAGTCTCTTcccattcaaatattttttttcaacaaAGTTCAGTAATGACCCAAGTAATTACAGTTGACTTTGCTAGGGTTGTTTTTA

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU925803 True 1587 lncRNA 0.45 2 49729408 49740600

Neighbor

gene id symbol gene type direction distance location
LOC110532294 LOC106572080 coding upstream 3857 49719101 ~ 49725551 (+)
ndrg3b LOC106572081 coding upstream 12946 49640408 ~ 49716462 (+)
phf20b LOC106572082 coding upstream 90157 49615638 ~ 49639251 (+)
si:ch211-218g4.2 LOC106572084 coding upstream 137426 49494307 ~ 49591982 (+)
sulf2b LOC106572085 coding upstream 235621 49313186 ~ 49493787 (+)
LOC118966066 trpc4ap coding downstream 1263 49741863 ~ 49743326 (+)
LOC110531195 trpc4ap coding downstream 4778 49745378 ~ 49785055 (+)
gss gss coding downstream 48122 49788722 ~ 49797031 (+)
LOC110533019 gss coding downstream 60163 49800763 ~ 49803462 (+)
LOC118966067 NA coding downstream 141556 49882156 ~ 49917857 (+)
G813798 LOC105030512 non-coding upstream 39404 49657658 ~ 49690004 (+)
G813789 NA non-coding upstream 70817 49640220 ~ 49658591 (+)
G813769 NA non-coding upstream 127010 49601968 ~ 49602398 (+)
G813747 NA non-coding upstream 165590 49563553 ~ 49563818 (+)
G813746 NA non-coding upstream 167111 49562063 ~ 49562297 (+)
G813870 NA non-coding downstream 71334 49811934 ~ 49812165 (+)
G814225 NA non-coding downstream 98438 49839038 ~ 49839290 (+)
G814281 NA non-coding downstream 138480 49879080 ~ 49879349 (+)
G814313 LOC106610265 non-coding downstream 200869 49941469 ~ 49941746 (+)
G813139 NA other upstream 613790 49115137 ~ 49115618 (+)
G813074 etbr2 other upstream 722698 48962187 ~ 49006710 (+)
G813071 NA other upstream 769417 48959749 ~ 48959991 (+)
G812688 LOC106572106 other upstream 1158815 48545454 ~ 48570593 (+)
G812143 NA other upstream 1747107 47982001 ~ 47982301 (+)
G815428 NA other downstream 1055614 50796214 ~ 50800381 (+)
G815610 NA other downstream 1337847 51078447 ~ 51078942 (+)
G815767 casz1 other downstream 1604772 51345372 ~ 51346494 (+)
LOC110532349 LOC106591969 other downstream 2582671 52323001 ~ 52325924 (+)
LOC110532368 LOC106572016 other downstream 2985821 52692676 ~ 52734929 (+)

Expression


Co-expression Network