XLOC_027173 (lmo3)


Basic Information

Item Value
gene id XLOC_027173
gene name lmo3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12612145 ~ 12679293 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053555
ctcacgctccatccttcacTCTTTCCCTGGGTATTTCGGCAGGGAGAGAAAAGGagaaccagagagagagagagagggggagcaAAAAAACGAGAAGGGAAAAAAGCTAGACTGAGCTCTGTCAATTGGAGTGAGTGCACTACTAAGTCTGGCTTCACTACAAAGGTTAGCAGATCTGACTGTCAATACTGTCAGAGGAATGGAGTCTTAGGGAGGGGAGGGAGCAAAGGAGGTGGAGACACGAAGGTTAGGTGGTGGGGGAGGCAGGAGGGTTTGCTTTGAGAGAAAGAGATACTTTGATATTTCGGAATGTTAGAAGGGTGAATGTGGAGAACTGGAGGTTGGGGATCTAATTACCGGGCCATAATTGGGGGCTAGGGAATAGGTTGCCGTCCTCTCAACTCGCTGCAGATCAATTATGTTAAGAGAACATCTGTAAGTAGAACTTAATGAGGTCCATTAGAGCAACATGCGCTGCCTTCCCTAACGGTGCTTGTCAGCTTCTTGGATGAGCTGGAGTGTGCTGCTAACTAGGGACCTGGTGAAGGTGCTTAAATAGGCGAGGAGACGTGCGGGCCGGCTCAGGTCTGTTTTGCTTTGCTGCCAGGGAGGGAACGAGATCGCAAGCGAAGAAACAGCCATCGTGGGGAGAAGGAGGGGAATCTTTTTAGAAAAGGAGCGAGGAGGAGTTGCACCAAGGCGGGCTGCGTGTTTTTAACCCGCTCGCCTGGAACTTGACAAGGGAACCGGCTATATTTGAGCTTCCATCTCGTCTTAATCTGCAACTTTTCCTCGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAGTACTGGCACGAAGACTGCCTCAAGTGTGCCTGCTGCGACTGCAGACTCGGCGAGGTGGGATCCACACTGTACACCAAAGCCAACCTCATCCTCTGTCGGAGGGACTACCTACGGTTGTTCGGCGTGACGGGAAACTGTGCGGCTTGCAGTAAACTCATCCCAGCGTTCGAGATGGTCATGAGAGCCAAGGAGAACGTCTATCATCTGGACTGCTTTGCCTGCCAGCTGTGCAACCAGAGGTTCTGCGTCGGAGACAAGTTTTTCCTAAAGAACAACATGATCCTCTGTCAGACAGACTACGAGGAGGGATTGATGAAGGAGGGCTACGCGCCGCAGGTCCGCTGA
>TCONS_00053556
GGCTCAGGTCTGTTTTGCTTTGCTGCCAGGGAGGGAACGAGATCGCAAGCGAAGAAACAGCCATCGTGGGGAGAAGGAGGGGAATCTTTTTAGAAAAGGAGCGAGGAGGAGTTGCACCAAGGCGGGCTGCGTGTTTTTAACCCGCTCGCCTGGAACTTGACAAGGGAACCGGCTATATTTGAGCTTCCATCTCGTCTTAATCTGCAACTTTTCCTCGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAGTACTGGCACGAAGACTGCCTCA
>TCONS_00053557
tgtAGTACAGAGCTCATAGCATGTTTTCGCGCGCGTCTCAGAGAGGTGCGCATTAAGTTTGTGTTAGCGAGCGCGCGCTCCGTTACTCCGGCTGTCGGTAATAACCGAATGACCTTTTCCTCCTCGTGTAATGTCTCACTGGTGAGGGATTGGGTTTGAAGATAATAAAGCTAGGCTTCACTATTCCTCGTTCCTCACTCACTGATGGGCAAGTTGTTGTGAGCCTTCTCAGAATACTCAATACATGACGGCTCGCGCGAGAACACCTGTAGCTTTTGGTGCGAACAACTACTCGTAGATGATCCATGTGGACCTCATTATTTTTAACCTGAAGATCACTCTTATCCGCGGTGCAATGTCAGATTCGTGAACTTTTGCTCCGAGGAATATTGAGTTGGAGTCGGTGCTATCCTAACTTAACCTTCTGCGTAACTTGGTCAAGAAGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAGTACTGGCACGAAGACTGCCTCAAGTGTGCCTGCTGCGACTGCAGACTCGGCGAGGTGGGATCCACACTGTACACCAAAGCCAACCTCATCCTCTGTCGGAGGGACTACCTACGGTTGTTCGGCGTGACGGGAAACTGTGCGGCTTGCAGTAAACTCATCCCAGCGTTCGAGATGGTCATGAGAGCCAAGGAGAACGTCTATCATCTGGACTGCTTTGCCTGCCAGCTGTGCAACCAGAGGTTCTGCGTCGGAGACAAGTTTTTCCTAAAGAACAACATGATCCTCTGTCAGACAGACTACGAGGAGGGATTGATGAAGGAGGGCTACGCGCCGCAGGTCCGCTGACCATCCCGCGACTTCACAGCTCACAGGAGGACTTGAAGTGGACATGCAATCAGACACACAAAGCACTAGTGTCCTCTCCAGCCCCTGTCCCCCCACATCACACTGTATATACGAAGAAAGGGACGGTGTACTGTACAGATTAGCCAtagagacgtttttttttttttgtaagtcgGAAGAACATTCGAAGACGGACCAAGACTGTGGTTCTGATTTAACGACAATGCCTGACGGCCTTATGAAGACCAGACTTTTGTGAACACAAACACCAAACCCCCCACATTGCCATTAACAGGGTGAAGATTAtgtagtaaaaacaaaaattgatCATAAGATCTCAGGTTCAATGGGTTTTCTCATTGTCCGTTGTGATTTCTTTCGTCTGCATTACATCTGAACCGGGATTTGGAGTAATTACGAACAGCCAATCAGGAGATCTTTGACGTGTAATGTATAGTTATGAGAACCAATGAGATTTCACAGTGGGCGGAGCTACTCTGTGTCCTGATTAAAATGCTTCGAACTGATCTTTGGCCTTCGACATCTTTAACAGCAAGTTCCTTGGTGACATTATGACTTTTTTATACTTAAAAAGACCCGATGCGAACATTTGTGCAAAGGAAACTATGAGTTAGTTTCttcactgtatttatttaataggCTTTTCGTCATTGCGTGTACTTCAAGGCTCGTCCCTGACATGTTTATACCTGAAGAGTTTTCAAGCATCTCCTCCAGACGTGACGAACACCACCTcgtatttgttttttgttgcttttgAGCGGCCCATTTTGATCagaaccctgtttaaacacaatcaGGTCGCATTACTGGAGAATACCTGGTCGGAGGATTTGCCTTTTACCGGGTTTTGTTTACTATCGACTCTCAAGCGCAAATCACTACTGTAGCCTACAATGTTGATAATCCTTTTATGGGCTATGATTACCTTTGGGAACCGAGGGGATATAGCCTAGAGAAAAATATGAAGACAGACTTAATTTGTATATGGTGgttgtatatatttaaaacaaaaaaaatattccttTTTGCTTGCTATTGTATATGGATTTTCTTTTTATGTGTTATTCAGCATGAGATGTTTATTTTTAGGACGTGTACATACTGTACTGTAATCATTTTAAGCACAAATGTAATACAGTTTTATTGTGTTAGCA
>TCONS_00053558
AGCATATGCCTTTGTCATCCGCTGTCATTTGTTCGCCGCCACTTGCCTCGCCACGGCTGCTGGTCGATCTAATTTCATAGTCGAGCACTGTTGTGACAAACGGAGTCTTAACAGCGTGTGGCGCTGAGCGATAGCGGCTCGCTCGCTCTTTCTTTCTCCCTCCCGTGTTTTGTTGATTGGTGTTTTCGTCGTTTTCACTCTTTTCTGCCGGAGCGAGCTGGATTGTTACTTGTAACAAAAGCGAAGCACCCTCGCGCGCATACAGCTGCTCACTTCACGCGCATCTTTGGCTCGCGCCTCGTCTTGTTGCATGGTGTTTCTGGGAGCCGAAGCGGGTCAACCAATGCAGAAAAGGGAGAAAAGTTTCGCGAGATTGCCTGGACAACGCATCGTGGCGACGAGCGCATTATAACTATCCCGAGGGAGGTCCTCAATTCAGACAGAGACACTCAATTTACCACAGCTGAGAAATCTCTCGGTGACCCTCTCACTCAAAGTTCACAATTTCTCACTGCTTGCGCTCTCACCCCCTCCAAGAGCAGCATATACATTAGGTGGAATCTATGGCTCTGACAGCTTCTCCTGCACAAGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAGTACTGGCACGAAGACTGCCTCAAGTGTGCCTGCTGCGACTGCAGACTCGGCGAGGTGGGATCCACACTGTACACCAAAGCCAACCTCATCCTCTGTCGGAGGGACTACCTACGGT
>TCONS_00053559
GTCTTAACAGCGTGTGGCGCTGAGCGATAGCGGCTCGCTCGCTCTTTCTTTCTCCCTCCCGTGTTTTGTTGATTGGTGTTTTCGTCGTTTTCACTCTTTTCTGCCGGAGCGAGCTGGATTGTTACTTGTAACAAAAGCGAAGCACCCTCGCGCGCATACAGCTGCTCACTTCACGCGCATCTTTGGCTCGCGCCTCGTCTTGTTGCATGGTGTTTCTGGGAGCCGAAGCGGGTCAACCAATGCAGAAAAGGGAGAAAAGTTTCGGTATACAAATGCTCTCCGTCCAGCCGGACACCAAGCCAAAGGGCTGTGCCGGCTGCAACCGGAAAATCAAGGACCGCTACCTGCTGAAGGCCCTGGACAAGTACTGGCACGAAGACTGCCTCAAGTGTGCCTGCTGCGACTGCAGACTCGGCGAGGTGGGATCCACACTGTACACCAAAGCCAACCTCATCCTCTGTCGGAGGGACTACCTACGGTTGTTCGGCGTGACGGGAAACTGTGCGGCTTGCAGTAAACTCATCCCAGCGTTCGAGATGGTCATGAGAGCCAAGGAGAACGTCTATCATCTGGACTGCTTTGCCTGCCAGCTGTGCAACCAGAGGTTCTGCGTCGGAGACAAGTTTTTCCTAAAGAACAACATGATCCTCTGTCAGACAGACTACGAGGAGGGATTGATGAAGGAGGGCTACGCGCCGCAGGTCCGCTGACCATCCCGCGACTTCACAGCTCACAGGAGGACTTGAAGTGGACATGCAATCAGACACACAAAGCACTAGTGTCCTCTCCAGCCCCTGTCCCCCCACATCACACTGTATATACGAAGAAAGGGACGGTGTACTGTACAGATTAGCCAtagagacgtttttttttttttgtaagt

Function

symbol description
lmo3 Predicted to enable metal ion binding activity. Is expressed in basal plate midbrain region; nervous system; neural plate; notochord; and presumptive diencephalon. Orthologous to human LMO3 (LIM domain only 3).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-201 Predicted to enable metal ion binding activity. Is expressed in basal plate midbrain region; nervous system; neural plate; notochord; and presumptive diencephalon. Orthologous to human LMO3 (LIM domain only 3).

Ensembl:

ensembl_id ENSDARG00000008720

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053555 False 1241 mRNA 0.52 4 12612145 12678115
TCONS_00053556 False 340 mRNA 0.54 2 12612723 12620903
TCONS_00053557 False 2069 mRNA 0.45 4 12615836 12679293
TCONS_00053558 False 807 mRNA 0.54 4 12617108 12657812
TCONS_00053559 True 883 mRNA 0.53 4 12617212 12678288

Neighbor

gene id symbol gene type direction distance location
XLOC_027172 pimr169 coding upstream 242479 12365775 ~ 12369666 (+)
XLOC_027170 pimr214 coding upstream 250462 12333168 ~ 12361683 (+)
XLOC_027171 pimr170 coding upstream 259500 12348568 ~ 12352645 (+)
XLOC_027169 tmem121b coding upstream 299169 12308976 ~ 12312976 (+)
XLOC_027168 mkrn1 coding upstream 304311 12292274 ~ 12307834 (+)
XLOC_027174 AL954848.1 coding downstream 23147 12702440 ~ 12724404 (+)
XLOC_027175 NA coding downstream 73261 12752554 ~ 12755202 (+)
XLOC_027176 NA coding downstream 133907 12813200 ~ 12819377 (+)
XLOC_027177 wif1 coding downstream 252470 12931763 ~ 12956718 (+)
XLOC_027178 vhll coding downstream 287347 12966640 ~ 12968021 (+)
XLOC_027166 NA non-coding upstream 546782 12063991 ~ 12065363 (+)
XLOC_027165 NA non-coding upstream 559475 12039649 ~ 12052670 (+)
XLOC_027162 NA non-coding upstream 661219 11946875 ~ 11950926 (+)
XLOC_027161 NA non-coding upstream 818362 11789799 ~ 11793783 (+)
XLOC_027160 NA non-coding upstream 839546 11761954 ~ 11772599 (+)
XLOC_027179 NA non-coding downstream 300219 12979512 ~ 12980325 (+)
XLOC_027181 NA non-coding downstream 301403 12980696 ~ 12985047 (+)
XLOC_027182 NA non-coding downstream 317827 12997120 ~ 13024021 (+)

Expression


Co-expression Network